PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Han005514 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 269aa MW: 30777.4 Da PI: 8.6919 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.6 | 1.2e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s Han005514 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 98.9 | 7.2e-33 | 81 | 173 | 8 | 100 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 s+ e+++++ ++e+ +Lk+++e Lqr+qR+llGedL +L+ keL+qLe+qLe+sl+kiRs+K++ +l+q+ elq+ke+ l e+nkaLr+klee Han005514 81 SQPENESQYNYHEYLRLKARVEVLQRSQRNLLGEDLAPLNTKELEQLEHQLETSLRKIRSTKTQSMLNQLAELQRKEQVLAETNKALRNKLEE 173 4678999***********************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.515 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.65E-44 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 2.88E-34 | 2 | 90 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.7E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.4E-27 | 82 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.557 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS 60 SSMVKTLEKY HSCSFGSLKA SQPENESQYN YHEYLRLKAR VEVLQRSQRN LLGEDLAPLN 120 TKELEQLEHQ LETSLRKIRS TKTQSMLNQL AELQRKEQVL AETNKALRNK LEENAQEFPR 180 QMWEANAQTI PYNPLPTHSD EFFQPLGLNT AMHNSFNGLR YNPIGSDEMN VAGVNANNHN 240 GLFPXLDAVA DEMCNPNFSQ GKNKVISCX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 5e-26 | 92 | 171 | 22 | 101 | Developmental protein SEPALLATA 3 |
4ox0_B | 5e-26 | 92 | 171 | 22 | 101 | Developmental protein SEPALLATA 3 |
4ox0_C | 5e-26 | 92 | 171 | 22 | 101 | Developmental protein SEPALLATA 3 |
4ox0_D | 5e-26 | 92 | 171 | 22 | 101 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MADS-box transcription factor that acts redundantly with J2 to control meristem maturation and inflorescence architecture. {ECO:0000269|PubMed:28528644}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022017817.1 | 0.0 | MADS-box protein CMB1-like | ||||
Refseq | XP_022017819.1 | 0.0 | MADS-box protein CMB1-like | ||||
Swissprot | Q7Y040 | 1e-106 | EJ2_SOLLC; MADS-box protein EJ2 | ||||
TrEMBL | A0A251VF33 | 1e-179 | A0A251VF33_HELAN; Putative MADS-box protein CMB1 | ||||
STRING | XP_010257958.1 | 1e-117 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15800.1 | 2e-89 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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