PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Han005291 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | C3H | ||||||||
Protein Properties | Length: 277aa MW: 31395.4 Da PI: 8.3942 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.5 | 4.7e-08 | 126 | 146 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C +f+r G C++Gd C FaHg Han005291 126 VCADFRR-GNCSRGDLCEFAHG 146 5999***.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 3.1E-6 | 121 | 147 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.652 | 121 | 148 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.9E-6 | 125 | 148 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.3E-6 | 126 | 146 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.4 | 156 | 179 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MASSCLDNKF NPLFHTNKKS LWDIDIPPRK LLSRRASASS PESFLDQTES PRDLPEETLL 60 RKFLPYNTSD DEDGDPYAAD HFRMYEFKVR KCTRSRSHDW TDCPFAHPGE KARRRCPRRY 120 NYLGTVCADF RRGNCSRGDL CEFAHGVFEC WLHPSRYRTE ACKDGKNCQR KICFFAHTQR 180 QLRVVPTEPT RAPVEKCCTH CRCHLDAHHT ISPTSTLNLD LENLSLSPPA STPFSPARSG 240 AGFSPISRFA DGLARADSFG TTSMGILALS SRALNDL |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Specifically expressed in seeds. {ECO:0000269|PubMed:18487351}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022025461.1 | 0.0 | zinc finger CCCH domain-containing protein 2-like | ||||
Swissprot | Q9ZWA1 | 2e-67 | C3H2_ARATH; Zinc finger CCCH domain-containing protein 2 | ||||
TrEMBL | A0A251RML4 | 1e-175 | A0A251RML4_HELAN; Putative zinc finger, CCCH-type | ||||
STRING | XP_009789499.1 | 2e-92 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03790.1 | 2e-69 | C3H family protein |
Publications ? help Back to Top | |||
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