PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Basic Information? help Back to Top

TF ID

Han005242

Organism

Helianthus annuus

Taxonomic ID

4232

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus

Family

Trihelix

Protein Properties

Length: 278aa MW: 30807.9 Da PI: 9.874

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Han#S32074295	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	94.1	1.3e-29	56	139	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+l L+++r++m+ ++r+++lk+plWeevs+k+++ gf+rs+k+Ckek+en+ k++k+ikeg++++ + +t+++f+ql+ Han005242 56 RWPRQETLYLLKIRSDMDVAFRDASLKGPLWEEVSRKLASLGFHRSAKKCKEKFENVYKYHKRIKEGRSSK--ADGKTYKFFEQLQ 139 8******************************************************************96..66678****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0016	53	115	IPR001005	SANT/Myb domain
CDD	cd12203	2.96E-23	55	120	No hit	No description
PROSITE profile	PS50090	6.771	55	113	IPR017877	Myb-like domain
Pfam	PF13837	8.1E-20	55	141	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MLTGVSPSSG DSSAASPVQP TSTAAAAAEL GFSEDERGKT DDGGGGGGGR SSGGNRWPRQ 60 ETLYLLKIRS DMDVAFRDAS LKGPLWEEVS RKLASLGFHR SAKKCKEKFE NVYKYHKRIK 120 EGRSSKADGK TYKFFEQLQA LEGSPSAAGG GGGDDVNVNN AGGFPFSQLN VSESNSSGSS 180 SSSEEDEVVP DRRRNRKRKW KEFFGRLMKE VVEKQEELQS KFLDALDRRE RDRMAREEAW 240 RMQXMAKMKR EHELLVQERS MVAAKDAAVV TFLQKITX

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	192	198	RRNRKRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021987204.1	1e-142	trihelix transcription factor GT-2-like
TrEMBL	A0A251TG07	1e-141	A0A251TG07_HELAN; Putative duplicated homeodomain-like superfamily protein
STRING	Solyc12g056510.1.1	2e-94	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	7e-45	Trihelix family protein