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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Han005012 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
|
| Family |
MYB |
| Protein Properties |
Length: 288aa MW: 33504.4 Da PI: 10.3547 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PUT-169a-Helianthus_annuus-23032 | PU_ref | plantGDB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 45.3 | 1.9e-14 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l
Han005012 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
78*****************************.************986 PP
|
| 2 | Myb_DNA-binding | 35 | 3.2e-11 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l
Han005012 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103
68*****************99.********8..**********9986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 288 aa
Download sequence Send
to blast |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPGDDPR 120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180
LASLQKRRKL KAAGIDNRHR KRKRKGIDYN AEIPFEKRPP PGFYDVTDES SVVEQPKFPT 240
TIEELEGERR ADKEARLRKQ DIARNKIAQR QDAPTAILPA KQMNDPRT
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5mqf_L | 1e-129 | 2 | 278 | 3 | 280 | Cell division cycle 5-like protein |
| 5xjc_L | 1e-129 | 2 | 278 | 3 | 280 | Cell division cycle 5-like protein |
| 5yzg_L | 1e-129 | 2 | 278 | 3 | 280 | Cell division cycle 5-like protein |
| 5z56_L | 1e-129 | 2 | 278 | 3 | 280 | Cell division cycle 5-like protein |
| 5z57_L | 1e-129 | 2 | 278 | 3 | 280 | Cell division cycle 5-like protein |
| 5z58_L | 1e-129 | 2 | 278 | 3 | 280 | Cell division cycle 5-like protein |
| 6ff4_L | 1e-129 | 2 | 278 | 3 | 280 | Cell division cycle 5-like protein |
| 6ff7_L | 1e-129 | 2 | 278 | 3 | 280 | Cell division cycle 5-like protein |
| 6icz_L | 1e-129 | 2 | 278 | 3 | 280 | Cell division cycle 5-like protein |
| 6id0_L | 1e-129 | 2 | 278 | 3 | 280 | Cell division cycle 5-like protein |
| 6id1_L | 1e-129 | 2 | 278 | 3 | 280 | Cell division cycle 5-like protein |
| 6qdv_O | 1e-129 | 2 | 278 | 3 | 280 | Cell division cycle 5-like protein |
| Search in ModeBase |
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 186 | 204 | RRKLKAAGIDNRHRKRKRK |
| 2 | 199 | 204 | RKRKRK |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed extensively in shoot and root meristems. {ECO:0000269|PubMed:8917598}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
