PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han004762
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family HSF
Protein Properties Length: 303aa    MW: 35434.5 Da    PI: 5.1274
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-169a-Helianthus_annuus-26979PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind96.52.8e-301859102
                   HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind   9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102
                   +++d+ +++++sws+n++sf+v+d+  f+ ++Lp++Fkh+nf+SF+RQLn+YgFkk++ e+         weF+++ F +++ +ll++i+rkk 
     Han004762   1 MVNDPLTDHIVSWSHNNRSFIVWDPPAFSGELLPRFFKHNNFSSFIRQLNTYGFKKIDPEQ---------WEFANEDFIRDRPHLLKNIHRKKP 85 
                   899******************************************************9998.........*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF004472.8E-27183IPR000232Heat shock factor (HSF)-type, DNA-binding
SMARTSM004153.5E-44183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.0E-33183IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.72E-30183IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.9E-93244IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043403357IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-94557IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MVNDPLTDHI VSWSHNNRSF IVWDPPAFSG ELLPRFFKHN NFSSFIRQLN TYGFKKIDPE  60
QWEFANEDFI RDRPHLLKNI HRKKPVHSHS MQNVNIHEAS SSSALTESER IQYKKDIYRL  120
RLENKSLSLQ FQTQQKEQHD IESAARALTE RLKLAVKHQK DLLCTLDYTL QKPAQNLDTN  180
DRKRRYLSEN NDQMCSFDVQ ISETTSIDAL LALDLELVEQ LESCIMFWED ALTDVHQKSP  240
INLETGYEEC EIATTSEPVN TVGVNDGFWE QFMTENPGGS LTDNDSRGFD QYGTFWWKHE  300
ECK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-1818327120Heat shock factor protein 1
5d5u_B3e-1818336129Heat shock factor protein 1
5d5v_B3e-1818336129Heat shock factor protein 1
5d5v_D3e-1818336129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022035285.10.0heat stress transcription factor A-4c-like
RefseqXP_022035286.10.0heat stress transcription factor A-4c-like
TrEMBLA0A251V0U80.0A0A251V0U8_HELAN; Putative winged helix-turn-helix DNA-binding domain, Heat shock transcription factor family
STRINGXP_009590974.12e-89(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.14e-62HSF family protein