PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Han004425 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | G2-like | ||||||||
Protein Properties | Length: 343aa MW: 36979.9 Da PI: 9.1833 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 92.7 | 3e-29 | 37 | 90 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ +LH++Fv av+qL G+ekA+Pk+il+lm+v+gLt+e+v+SHLQkYRl Han004425 37 KPRVVWSIDLHRKFVAAVNQL-GIEKAVPKRILDLMNVEGLTRENVASHLQKYRL 90 79*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.427 | 34 | 93 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.79E-19 | 34 | 94 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.4E-30 | 35 | 95 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.3E-25 | 37 | 90 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.5E-6 | 39 | 89 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MKGSGDPNGK FNRERKDEDE DVEDNGNEDD DSSTQKKPRV VWSIDLHRKF VAAVNQLGIE 60 KAVPKRILDL MNVEGLTREN VASHLQKYRL YLKRISQQAN MVVAFGGSKD ASSYMRMSSL 120 DGLGDFRSLS GSGRLPNAQI SSYSHSGMLG RLNSATGMTL HSLTGPSLIQ PTHTQNLTGS 180 VSSVSSLNKF QPVVLPTPPN HQPANLFQGI PTSFDLGQLQ QSNKPNIQLP DFNPVDESRI 240 FNGSSTFSTL GSQSSLNLAS SSSTFLDAPN FHDQLPPNGS LKYGYPASGN TVTGFGSNIT 300 STASVPLEGQ GQTQSQRQRH GQHGKQSYGQ YSSNAFSTLA AAA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-26 | 33 | 96 | 1 | 64 | ARR10-B |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021990178.1 | 0.0 | two-component response regulator ARR12-like | ||||
TrEMBL | A0A251TQ43 | 0.0 | A0A251TQ43_HELAN; Two-component response regulator | ||||
STRING | XP_009757804.1 | 3e-89 | (Nicotiana sylvestris) | ||||
STRING | XP_009593176.1 | 3e-89 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 8e-43 | response regulator 12 |