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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Han004218 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | C3H | ||||||||
Protein Properties | Length: 392aa MW: 43557.1 Da PI: 8.3514 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27 | 7.6e-09 | 77 | 97 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f+++ G C yG+rC++ H+ Han004218 77 VCTFYQK-GACAYGSRCRYDHV 97 5******.*************7 PP | |||||||
2 | zf-CCCH | 17.2 | 9.5e-06 | 176 | 195 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+ fa+ G C++G++C+ Hg Han004218 176 CS-FAAAGSCPRGENCPHVHG 195 66.*************98887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.587 | 44 | 71 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.18E-7 | 44 | 69 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-5 | 45 | 70 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.314 | 72 | 99 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.5E-4 | 74 | 98 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.45E-5 | 75 | 96 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-6 | 77 | 97 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.9E-4 | 77 | 96 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.371 | 170 | 197 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.19 | 171 | 196 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 0.001 | 175 | 195 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 1.55E-13 | 228 | 303 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 4.9E-10 | 232 | 298 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 2.14E-4 | 238 | 298 | No hit | No description |
PROSITE profile | PS50089 | 12.209 | 239 | 297 | IPR001841 | Zinc finger, RING-type |
SMART | SM00184 | 2.9E-7 | 239 | 296 | IPR001841 | Zinc finger, RING-type |
Pfam | PF00097 | 6.9E-7 | 239 | 296 | IPR018957 | Zinc finger, C3HC4 RING-type |
PROSITE pattern | PS00518 | 0 | 263 | 272 | IPR017907 | Zinc finger, RING-type, conserved site |
SMART | SM00356 | 0.081 | 326 | 354 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.911 | 326 | 355 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
XAGSKVAFEG RLNLKGYSSS SFNPKSPMKI AATEISPIMS LPANRTRVLC KFFAHGACLK 60 GEHCEFSHDW KDPANNVCTF YQKGACAYGS RCRYDHVKVP QRQASASSST YSYQYAVSES 120 VSATAATGIT GEVSTVSRPF VSPAQSAWGE GSGENDLVND VIGQSRSTNP SDIVMCSFAA 180 AGSCPRGENC PHVHGDICPT CKKQCLHPFR PDEREEHKRS CEKKHKHLEA LKHSQEIECS 240 VCLERVLLKP TAAERKFGLL SECDHPFCIS CIRNWRSSSP TSGMDVNSAL RSCPICRKLS 300 YFVIPSVIWY ATKEEKQEIV DSYKARLRSI DCRHFDFGNG TCPFGSSCFY KHAYRDGRLE 360 EVVLRHLGAE DGQTVVAKDI RLSDFLSRMR IR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021977033.1 | 0.0 | putative RING-type E3 ubiquitin transferase C3H69 | ||||
Swissprot | E0X9N4 | 1e-170 | C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69 | ||||
TrEMBL | A0A251VP10 | 0.0 | A0A251VP10_HELAN; Putative zinc finger CCCH domain-containing protein 69 | ||||
STRING | XP_002526765.1 | 0.0 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-148 | C3H family protein |
Publications ? help Back to Top | |||
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