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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Han004184 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | GRAS | ||||||||||||
Protein Properties | Length: 403aa MW: 44415 Da PI: 5.3531 | ||||||||||||
Description | GRAS family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 32.4 | 1.2e-10 | 320 | 400 | 3 | 86 |
GRAS 3 elLlecAeavssgdlelaqalLarlsel..aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 ++L+++Ae sg+++ aq +Larl+++ ++p+ +p+qR+a+yf+eAL+ + ++s l + + + n ++ a+k++se Han004184 320 DQLFAAAELTLSGNFSHAQGILARLNHQfaSAPAPtKPFQRAAFYFKEALQMQSQSS---LNQNRVAPP---FNGFVQMGAYKMLSE 400 79*************************9954555569**************988873...332222222...235555555555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 4.2E-8 | 320 | 400 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MIGMAFEVAT FQQSLKEPNK LKEASYGSNN NSNSNEPISV LDTRRSPSPS TSTSTHSSSF 60 NGGATTTPPP PPVSDQDNPQ QKWPESVPQE KGFSGYDPNF PATADGGRKD EWPELQPIPA 120 DFELQQQRFG VSLEDWESLL SEPTASQAQD QSLRWISGDF DDSSLSLQQL LQSNPNDQNA 180 PVSNVSETTQ LPLSFNQQNP NLFPFSNSDQ NPPVVFNNPP PPPQIHLQKS PVFNHALHKV 240 PVFQQNLQKV PVSNLGHEKD PVSNMGLQKV VILNQGLQKV VLNQGYELVD KKPLMVAGTK 300 QETGPNSPQN HHQQYQLICD QLFAAAELTL SGNFSHAQGI LARLNHQFAS APAPTKPFQR 360 AAFYFKEALQ MQSQSSLNQN RVAPPFNGFV QMGAYKMLSE VSX |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022000427.1 | 0.0 | scarecrow-like protein 6 | ||||
TrEMBL | A0A251SRE6 | 0.0 | A0A251SRE6_HELAN; Putative transcription factor GRAS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 7e-09 | GRAS family protein |