PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Han003509 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | MYB | ||||||||||||
Protein Properties | Length: 190aa MW: 22047.8 Da PI: 10.0061 | ||||||||||||
Description | MYB family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.5 | 6.2e-18 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l++++ +G g W+t ar g++Rt+k+c++rw++yl Han003509 16 KGPWTMEEDLILINYISNHGEGVWNTLARSAGLKRTGKSCRLRWLNYL 63 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.8 | 1e-17 | 69 | 112 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++ Han003509 69 RGNITPEEQLLIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 112 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.3E-23 | 9 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.391 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.24E-30 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-12 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.8E-16 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.43E-10 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 25.859 | 64 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-25 | 67 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-15 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-16 | 69 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.57E-12 | 73 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MKKSPSNSSQ DVEVRKGPWT MEEDLILINY ISNHGEGVWN TLARSAGLKR TGKSCRLRWL 60 NYLRPDVRRG NITPEEQLLI MELHAKWGNR WSKIAKHLPG RTDNEIKNYW RTRIQKHIKQ 120 AGSFSGQKSS KHTDQATTST TQTFNAINPM QTYSPPYDNF QNFSGPFPTE TNENMWSMED 180 LWSMQLLNSD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-25 | 13 | 118 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}. | |||||
Uniprot | DEVELOPMENTAL STAGE: First detected in 15-20 mm buds. Expression increases as flowers develop. {ECO:0000269|PubMed:1840903}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed only in flowers. {ECO:0000269|PubMed:1840903}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed only in flowers. {ECO:0000269|PubMed:1840903}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022011519.1 | 1e-141 | myb-related protein 340-like | ||||
Swissprot | P81391 | 4e-94 | MYB05_ANTMA; Myb-related protein 305 | ||||
Swissprot | P81396 | 4e-94 | MYB40_ANTMA; Myb-related protein 340 | ||||
TrEMBL | A0A251S7H5 | 1e-140 | A0A251S7H5_HELAN; Putative myb protein | ||||
STRING | XP_009618404.1 | 1e-101 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27810.1 | 2e-82 | myb domain protein 21 |
Publications ? help Back to Top | |||
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