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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Han002890 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | HSF | ||||||||||||
Protein Properties | Length: 233aa MW: 26034.1 Da PI: 5.7909 | ||||||||||||
Description | HSF family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 115.4 | 3.5e-36 | 24 | 114 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d++ +++isw+eng++fvv+ + efa+++LpkyFkh+nf+SF+RQLn+YgF+k+ +++ weF++++F+kg+k+ll++i+ Han002890 24 FLTKTYQLVDDPASDDMISWNENGTAFVVWRPAEFARDLLPKYFKHNNFSSFIRQLNTYGFRKIVSDR---------WEFANDYFRKGEKSLLREIR 111 9****************************************************************999.........******************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k Han002890 112 RRK 114 *98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 2.6E-56 | 20 | 113 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 4.4E-38 | 21 | 113 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 4.79E-35 | 21 | 113 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 2.4E-21 | 24 | 47 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.5E-32 | 24 | 113 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.4E-21 | 62 | 74 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 63 | 87 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.4E-21 | 75 | 87 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MATSSVEKTG EMTGETNRTI PTPFLTKTYQ LVDDPASDDM ISWNENGTAF VVWRPAEFAR 60 DLLPKYFKHN NFSSFIRQLN TYGFRKIVSD RWEFANDYFR KGEKSLLREI RRRKISIAPA 120 TQPTSAVATA IPLVTMPITT SSPGNSSEEL GGSSNSSPIA TMINGQTCTS RTHLLEENER 180 LKEQNSSLRC EPDHLRSMCC NVVTMMSNFI VGQPEIESSE KVVEGSASDP MVX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 2e-26 | 12 | 118 | 11 | 125 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021969108.1 | 1e-168 | heat stress transcription factor B-2b-like | ||||
Refseq | XP_021969109.1 | 1e-168 | heat stress transcription factor B-2b-like | ||||
Swissprot | Q6Z9C8 | 7e-68 | HFB2B_ORYSJ; Heat stress transcription factor B-2b | ||||
TrEMBL | A0A251UEV9 | 1e-160 | A0A251UEV9_HELAN; Putative winged helix-turn-helix DNA-binding domain, Heat shock transcription factor family | ||||
STRING | VIT_02s0025g04170.t01 | 7e-86 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62020.1 | 4e-67 | heat shock transcription factor B2A |
Publications ? help Back to Top | |||
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