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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Han002857 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | MIKC_MADS | ||||||||||||
Protein Properties | Length: 236aa MW: 27173.3 Da PI: 9.6864 | ||||||||||||
Description | MIKC_MADS family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 91.5 | 4.2e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCd++v +i+fs++gkl ey++ Han002857 9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDVDVPLIVFSTKGKLSEYAT 59 79***********************************************86 PP | |||||||
2 | K-box | 92.2 | 9e-31 | 77 | 173 | 3 | 99 |
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +++ + ++++ + s++ elakLk++ e Lq++qR+++GedL+sLs+keL +LeqqLe +l++ R kKn+++le+i+elqkk k+lq++n L kk++ Han002857 77 EKELNGTNNQSEGSWTLELAKLKAKFELLQKNQRNFMGEDLDSLSIKELLNLEQQLEAALRRLRLKKNQMMLESISELQKKDKSLQDQNSLLLKKIK 173 5666777888899*********************************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.9E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.179 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.27E-31 | 2 | 88 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.10E-37 | 2 | 75 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.4E-25 | 86 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.942 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MGRGKVTLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD VDVPLIVFST KGKLSEYATN 60 ASMVRILERY EQHSYTEKEL NGTNNQSEGS WTLELAKLKA KFELLQKNQR NFMGEDLDSL 120 SIKELLNLEQ QLEAALRRLR LKKNQMMLES ISELQKKDKS LQDQNSLLLK KIKGKEKELA 180 EPPLVDQQTK ENMVSFQLNL GEAYQAAGCD GQLEDTQRES QPLTVIPYWM LNLMSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 2e-18 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-18 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-18 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-18 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_A | 2e-18 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-18 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-18 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-18 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-18 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-18 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the early stages of tuberization. {ECO:0000269|PubMed:8756601}. | |||||
Uniprot | TISSUE SPECIFICITY: Abundant in vegetative organs. {ECO:0000269|PubMed:8543185}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022016988.1 | 1e-169 | truncated transcription factor CAULIFLOWER A-like | ||||
Swissprot | Q42429 | 3e-89 | AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog | ||||
TrEMBL | A0A251RXF9 | 1e-167 | A0A251RXF9_HELAN; Putative transcription factor, MADS-box, Transcription factor, K-box | ||||
STRING | XP_009792071.1 | 1e-99 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 2e-60 | AGAMOUS-like 8 |
Publications ? help Back to Top | |||
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