 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Han002848 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
|
| Family |
NAC |
| Protein Properties |
Length: 237aa MW: 27120.1 Da PI: 9.5676 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PUT-169a-Helianthus_annuus-6563 | PU_ref | plantGDB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 171 | 3.6e-53 | 6 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
lppGfrF Ptdeel+v+yL++kv+g++++l ++i+++d+yk++Pw+Lp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk +++ +g+ v
Han002848 6 LPPGFRFYPTDEELLVQYLCRKVAGHDFSL-QIIADIDLYKFDPWQLPSKAMFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVITT-EGRRV 103
79***************************9.89***************8777899*************************************99.9999* PP
NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
g+kk Lvfy g+apkg+kt+W+mheyrl
Han002848 104 GIKKALVFYVGKAPKGNKTNWIMHEYRL 131
**************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 237 aa
Download sequence Send
to blast |
MTQLSLPPGF RFYPTDEELL VQYLCRKVAG HDFSLQIIAD IDLYKFDPWQ LPSKAMFGEK 60
EWYFFSPRDR KYPNGSRPNR VAGSGYWKAT GTDKVITTEG RRVGIKKALV FYVGKAPKGN 120
KTNWIMHEYR LSDPQRKTGS SRLDEWVLCR IYKKNSSAQK TISGGQTTEQ SHGSPSSSSS 180
QFDDVLESLP EIQDRCFNLT RVNSIKTFXQ EEPKLNLQKF DSGHYDWASI ASFGLPX
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-105 | 1 | 160 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-105 | 1 | 160 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-105 | 1 | 160 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-105 | 1 | 160 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 1e-105 | 1 | 160 | 15 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 1e-105 | 1 | 160 | 15 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 1e-105 | 1 | 160 | 15 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 1e-105 | 1 | 160 | 15 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 1e-105 | 1 | 160 | 15 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 1e-105 | 1 | 160 | 15 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 1e-105 | 1 | 160 | 15 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 1e-105 | 1 | 160 | 15 | 174 | NAC domain-containing protein 19 |
| 4dul_A | 1e-105 | 1 | 160 | 12 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 1e-105 | 1 | 160 | 12 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in guard cells of the epidermis. {ECO:0000269|PubMed:25005917}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}. |
