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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Han002636 | ||||||||||||
Common Name | ham59 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | MIKC_MADS | ||||||||||||
Protein Properties | Length: 247aa MW: 28350.1 Da PI: 9.5855 | ||||||||||||
Description | MIKC_MADS family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.3 | 1.5e-31 | 24 | 73 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ Han002636 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 73 79***********************************************8 PP | |||||||
2 | K-box | 106.4 | 3.3e-35 | 95 | 192 | 7 | 100 |
K-box 7 ksleeakaeslqqelakLkkeienLq....reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 s++ea+a+ +qqe+akL+++i nLq + R+++Ge+L+++ k+L++Le +Lek++++iRskKnell+++ie++ k+e+el+++n+ Lr+k++e Han002636 95 GSVAEANAQFYQQEAAKLRQQIANLQnqnrQFYRNIMGESLGNMPAKDLKNLEGKLEKGISRIRSKKNELLFAEIEYMPKRENELHNNNQFLRAKIAE 192 45899*********************5433334789***********************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.4E-41 | 16 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.669 | 16 | 76 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.4E-33 | 17 | 88 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.47E-46 | 17 | 86 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 18 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-33 | 18 | 38 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.3E-27 | 25 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-33 | 38 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-33 | 53 | 74 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.5E-25 | 100 | 190 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.559 | 102 | 196 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MSFPNESGEM SPQRKLGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL 60 IVFSSRGRLY EYANNSVKGT IDRYKKACLD PPSSGSVAEA NAQFYQQEAA KLRQQIANLQ 120 NQNRQFYRNI MGESLGNMPA KDLKNLEGKL EKGISRIRSK KNELLFAEIE YMPKRENELH 180 NNNQFLRAKI AENERSQQQH MSLMPGSSDY DLVPPHQPFD GRNYLQVNDL QPNNSYSCQD 240 QTPLQLV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 2e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
5f28_A | 2e-20 | 16 | 84 | 1 | 69 | MEF2C |
5f28_B | 2e-20 | 16 | 84 | 1 | 69 | MEF2C |
5f28_C | 2e-20 | 16 | 84 | 1 | 69 | MEF2C |
5f28_D | 2e-20 | 16 | 84 | 1 | 69 | MEF2C |
6byy_A | 3e-20 | 16 | 84 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 3e-20 | 16 | 84 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 3e-20 | 16 | 84 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 3e-20 | 16 | 84 | 1 | 69 | MEF2 CHIMERA |
6c9l_A | 2e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Flower. Preferentially expressed in stamen and carpel and weakly in petal. Undetected in leaves and roots. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022017231.1 | 0.0 | floral homeotic protein AGAMOUS-like isoform X1 | ||||
Swissprot | Q40872 | 1e-140 | AG_PANGI; Floral homeotic protein AGAMOUS | ||||
TrEMBL | Q84LC3 | 0.0 | Q84LC3_HELAN; MADS-box transcriptional factor HAM59 | ||||
STRING | XP_010687169.1 | 1e-131 | (Beta vulgaris) | ||||
STRING | PGSC0003DMT400073134 | 1e-131 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-121 | MIKC_MADS family protein |