PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Basic Information? help Back to Top

TF ID

Han002537

Organism

Helianthus annuus

Taxonomic ID

4232

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus

Family

NAC

Protein Properties

Length: 251aa MW: 28341.4 Da PI: 9.2036

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Han#S18711368	PU_ref	Unigene	View CDS
PUT-169a-Helianthus_annuus-10266	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	64.4	3.4e-20	2	57	73	128
NAM 73 rknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 r+nr+t+sgyWkatg d+ + + + + +glkktLvfy+g+apkg +++W+m+eyrl Han002537 2 RPNRVTTSGYWKATGADRLIRTDNFRSIGLKKTLVFYSGKAPKGIRSSWIMNEYRL 57 89******************999***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	29.787	1	78	IPR003441	NAC domain
SuperFamily	SSF101941	4.97E-23	2	77	IPR003441	NAC domain
Pfam	PF02365	6.6E-9	3	57	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
DRPNRVTTSG YWKATGADRL IRTDNFRSIG LKKTLVFYSG KAPKGIRSSW IMNEYRLPHH 60 EFERLQKAEI SLCRVYKRTG VEDHPSLPRT LQTKSTLISP NNSNKQHPQN ATSFNCFEGQ 120 SSHHNEHKTG GCNTTNINVG TALGLPNPIN SIFVNDVDDL RRILSSQQAL DNCPPSQLLN 180 MNNYQLNVCS NYSPNLSSNN LLAQQQQQQQ QPRSEQPELP PHVHPQALLA PNYLAGAVQG 240 AFPDRLWEWN X

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-20	2	78	88	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-20	2	78	88	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-20	2	78	88	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-20	2	78	88	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-20	2	78	91	168	NAC domain-containing protein 19
3swm_B	2e-20	2	78	91	168	NAC domain-containing protein 19
3swm_C	2e-20	2	78	91	168	NAC domain-containing protein 19
3swm_D	2e-20	2	78	91	168	NAC domain-containing protein 19
3swp_A	2e-20	2	78	91	168	NAC domain-containing protein 19
3swp_B	2e-20	2	78	91	168	NAC domain-containing protein 19
3swp_C	2e-20	2	78	91	168	NAC domain-containing protein 19
3swp_D	2e-20	2	78	91	168	NAC domain-containing protein 19
4dul_A	1e-20	2	78	88	165	NAC domain-containing protein 19
4dul_B	1e-20	2	78	88	165	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021987261.1	0.0	NAC domain-containing protein 35-like
TrEMBL	A0A251TG88	0.0	A0A251TG88_HELAN; Putative NAC domain-containing protein
STRING	POPTR_0003s03670.1	1e-66	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	7e-53	NAC domain containing protein 35