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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Han002520 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | GRF | ||||||||||||
Protein Properties | Length: 252aa MW: 28556.6 Da PI: 8.6825 | ||||||||||||
Description | GRF family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 71.7 | 8.7e-23 | 75 | 119 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs++v++++k+CEr +hrgr+rs k++e+ Han002520 75 DPEPGRCRRTDGKKWRCSKEVYPDSKYCERRMHRGRNRSGKPVEA 119 79***************************************9986 PP | |||||||
2 | QLQ | 59.4 | 1e-20 | 7 | 42 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT +Q+q+L++Q+l+yKy+++++P+Pp+Ll+ iq+ Han002520 7 PFTSTQWQELEHQALVYKYMISGMPIPPDLLFSIQR 42 8*********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.5E-13 | 6 | 42 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 3.6E-15 | 7 | 41 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.559 | 7 | 42 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 23.675 | 75 | 119 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.8E-18 | 76 | 118 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MASSRFPFTS TQWQELEHQA LVYKYMISGM PIPPDLLFSI QRSLDSSTKL FLHHQSPLQS 60 IGREYFQMGF GRKIDPEPGR CRRTDGKKWR CSKEVYPDSK YCERRMHRGR NRSGKPVEAP 120 NNTPPLQMCT KSPNYPSQTS HPSXIYPPQL SSRSSGSVLS SQDHFLLESS PYPHSEXDHS 180 YGMKEDVDEH PYLSESCGGG AISASMSDSW HLEPLAMKNS SLANHNPTAF FSDYQMKLLV 240 SKHLMQNNKA GG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021970380.1 | 1e-146 | growth-regulating factor 3-like | ||||
TrEMBL | A0A251UI58 | 1e-145 | A0A251UI58_HELAN; Putative WRC domain, Glutamine-Leucine-Glutamine, QLQ, Growth-regulating factor | ||||
STRING | VIT_11s0016g01250.t01 | 9e-70 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 1e-52 | growth-regulating factor 5 |