PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han002313
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family B3
Protein Properties Length: 261aa    MW: 29919.9 Da    PI: 7.9904
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S48349664PU_unrefUnigeneView CDS
PUT-169a-Helianthus_annuus-21355PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.44e-16165242184
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                f+k +++s+v +  +l lp +f++eh    ++++ ++lede+g++ e  +i +++     l++GW+ F+ +++L++gD ++F+ 
  Han002313 165 FVKSMVRSHVYSCFWLGLPQRFCREHLP--KSTVSMVLEDEDGNECEAVFISSRT----GLSGGWRAFALEHKLDDGDALLFQC 242
                89************************53..36789***************44444....4**********************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.9E-17157242IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-20159244IPR015300DNA-binding pseudobarrel domain
CDDcd100171.20E-21163240No hitNo description
SMARTSM010196.0E-13165258IPR003340B3 DNA binding domain
PfamPF023621.1E-14165243IPR003340B3 DNA binding domain
PROSITE profilePS5086310.207165258IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
XAGIFWNAIA IPSFFTLLGW LSFIALHLMA EEITSNSYEE ARKQQLLENK KRFEDLGILT  60
ISKTLSDLSK SEKKSKQREV KPKIRNGPVV EPRRSTRERN PIVSYQDDLD IGLPSIRRSK  120
SSSSWSSYLA RPLEEVRMAS YEAGIEAIKA AEKLQSNLQS EYPSFVKSMV RSHVYSCFWL  180
GLPQRFCREH LPKSTVSMVL EDEDGNECEA VFISSRTGLS GGWRAFALEH KLDDGDALLF  240
QCFTHKIQEY IVNHHMMEFR S
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Han.102610.0embryo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022000107.11e-144putative B3 domain-containing protein At5g58280
SwissprotQ9FHB23e-60Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBLA0A251SNT71e-143A0A251SNT7_HELAN; Putative DNA-binding pseudobarrel domain-containing protein
STRINGXP_009793972.11e-101(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.11e-47B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]