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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Han001690 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | MYB_related | ||||||||||||
Protein Properties | Length: 290aa MW: 32297.4 Da PI: 9.1646 | ||||||||||||
Description | MYB_related family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.4 | 6.1e-12 | 14 | 64 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+e l +++++G+g Wk I + R+ ++k++w++ Han001690 14 KQKWTAEEEEALRAGIAKHGTGKWKNIQKDPEfnhllHSRSNIDLKDKWRN 64 79***********************************9***********99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.432 | 9 | 70 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.89E-16 | 11 | 67 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.5E-15 | 12 | 65 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.4E-9 | 13 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-8 | 14 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.93E-20 | 15 | 65 | No hit | No description |
SuperFamily | SSF46785 | 1.03E-14 | 127 | 208 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00526 | 3.0E-15 | 127 | 192 | IPR005818 | Linker histone H1/H5, domain H15 |
PROSITE profile | PS51504 | 22.937 | 129 | 197 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene3D | G3DSA:1.10.10.10 | 1.6E-13 | 129 | 195 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 3.1E-10 | 132 | 190 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
XGSEWWRSDM GNPKQKWTAE EEEALRAGIA KHGTGKWKNI QKDPEFNHLL HSRSNIDLKD 60 KWRNMSVSAN GQGPREKSRT PKPKCNTDSP AMPLAIPQAH GPSPPVAVDP VSTDLNMDDG 120 SKCLLDGKTA SKYNAMIYDA LSTLKDPNGS STSAIVCFIE KRHEVPPNFR RLLTARLRRL 180 VAQEKLEKVQ NCYRLRREVL SGTKGPIPKP KENWPRLSSP FNSHLGETLE EAAVAAAYKV 240 AEAENKSFVA AEAVKEAERV SKMAEDTEAF LQLAKEVYER CSRGEVVMVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021990563.1 | 1e-162 | telomere repeat-binding factor 4-like | ||||
Swissprot | F4I7L1 | 4e-74 | TRB4_ARATH; Telomere repeat-binding factor 4 | ||||
TrEMBL | A0A251TQD5 | 1e-161 | A0A251TQD5_HELAN; Putative single myb histone 3 | ||||
STRING | XP_009757029.1 | 1e-123 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17520.1 | 8e-64 | MYB_related family protein |
Publications ? help Back to Top | |||
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