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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Han001116 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | C3H | ||||||||||||
Protein Properties | Length: 339aa MW: 36688.1 Da PI: 7.2571 | ||||||||||||
Description | C3H family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.5 | 2.6e-09 | 64 | 88 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+ C+ f++ GtC+y +C+FaH+ Han001116 64 FKTKMCCKFRA-GTCPYVTNCNFAHS 88 69*********.*************8 PP | |||||||
2 | zf-CCCH | 44.5 | 2.5e-14 | 218 | 243 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + +tG+C++G++C+FaHg Han001116 218 WKTRICNKWEQTGYCPFGSKCHFAHG 243 8************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-14 | 61 | 96 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-8 | 61 | 94 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.671 | 63 | 90 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.036 | 63 | 89 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.5E-6 | 64 | 88 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-6 | 134 | 162 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.549 | 134 | 162 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5 | 134 | 161 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-7 | 135 | 162 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.2E-18 | 212 | 248 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-10 | 214 | 248 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.741 | 217 | 245 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.7E-9 | 217 | 244 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-11 | 218 | 243 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
XGHLGTEDEY VNWNNESLTA DASSNSNHNG RQSQTRFGSE TPNRKPSGDS QANNRSKAIG 60 KMFFKTKMCC KFRAGTCPYV TNCNFAHSVE ELRKPPPNWQ EIVAAHEDER SEPREEYQIP 120 SLGSSGFIVE TQRSHKGRHC KKFYTEEGCP YGDSCTYLHD EQSRARESVA ICLGPGSGGG 180 YGGGGSNVND GGETYGGGGG GGTPLAASLN SAVKPSNWKT RICNKWEQTG YCPFGSKCHF 240 AHGATELHQN VGGLGDTDAK DPATVSDPNK QGMMVSKLAT DNMVVGSTPI AAQSDGYHVG 300 GQSQRLPGVI MRTGLRSFQK WKGPDKLSRI YGDWIDDIE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022020956.1 | 0.0 | zinc finger CCCH domain-containing protein 12-like | ||||
Swissprot | Q84UQ3 | 1e-113 | C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56 | ||||
TrEMBL | A0A251RLI0 | 0.0 | A0A251RLI0_HELAN; Putative zinc finger, CCCH-type | ||||
STRING | XP_010096556.1 | 1e-144 | (Morus notabilis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 4e-96 | C3H family protein |