PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF ID | Han000682 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
|
||||||||||||
Family | NAC | ||||||||||||
Protein Properties | Length: 453aa MW: 49780.4 Da PI: 4.6132 | ||||||||||||
Description | NAC family protein | ||||||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 143.2 | 1.4e-44 | 7 | 133 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 + GfrF+Ptde lvv+yLk+k+ gk++ ++++ev+iy++ PwdLp k ++k+++ ewyfF++++kky++g r+nrat++g+Wkatgkd+ v +g++ Han000682 7 ATGFRFKPTDEILVVYYLKRKILGKRIAS-NAVAEVNIYDFCPWDLPdKsSLKSGDLEWYFFCPKSKKYSSGGRANRATETGFWKATGKDRYVEY-RGRT 104 68************************999.88**************96347777888*************************************9.9999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 v + ktLvf+ gra++g++tdWv+heyr+ Han000682 105 VATIKTLVFHLGRAKDGKRTDWVLHEYRM 133 ***************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.49E-54 | 4 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.627 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-22 | 8 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 453 aa Download sequence Send to blast |
XRPYGLATGF RFKPTDEILV VYYLKRKILG KRIASNAVAE VNIYDFCPWD LPDKSSLKSG 60 DLEWYFFCPK SKKYSSGGRA NRATETGFWK ATGKDRYVEY RGRTVATIKT LVFHLGRAKD 120 GKRTDWVLHE YRMDDKQLAD AGVVQDTYVL CRIFKKSGAG PKNGAQYGAP FNEDEWDDDL 180 VSSIDSQAVV GLVGASITTD RKQTEPEPGS SIVTISATEP TSTLNYKQES LATTDIVEPG 240 TSGVTLSATE PTNTLNSKRK GPATSDMTEP AANKPYKPTS TMNYEQKGPA TTNITEPGLS 300 NVMLSANEPT KALNYKQKGP ATTDMTEPGS SNVMFSANEL TKTLNCKQKG PATMNMIVPQ 360 TTHGLSVTEP GSSERPTDDD MSFLEVIDQM LGAPEEAVNM EEDKIRTPNE DDAILGEWED 420 ILTADDLYTD GLKYTVDLYL NPDGPDLAEF FVG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-42 | 6 | 162 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-42 | 6 | 162 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-42 | 6 | 162 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-42 | 6 | 162 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 4e-42 | 6 | 162 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 4e-42 | 6 | 162 | 17 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022021435.1 | 0.0 | NAC domain-containing protein 83-like | ||||
TrEMBL | A0A251VG46 | 0.0 | A0A251VG46_HELAN; Putative NAC domain-containing protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G09330.4 | 2e-78 | NAC domain containing protein 82 |