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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Han000593 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | GRAS | ||||||||||||
Protein Properties | Length: 528aa MW: 57564.8 Da PI: 5.7439 | ||||||||||||
Description | GRAS family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 435.9 | 3e-133 | 155 | 523 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 lv++L++cAea ++ d++la++l++r la++++ +m+++a yfteALa r+++ l+p++ + ++s + ++ f+e++P+lkf+h+taNq Han000593 155 LVHTLMACAEAGTKPDQKLAETLVSRAGMLAASQAGAMRKVALYFTEALACRIYK--------LNPKSPPI-HQSFNNILQSHFYEACPYLKFAHFTANQ 245 689****************************************************........66666653.34444455678***************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 aIlea++g+++vH+iDf+i+qG+QWpaLlqaLa Rp+gpp++R+Tgvg+p ++ + + l+e+g +La++A++++v+fe++ ++a++l+d+e+ +L+++ Han000593 246 AILEAFSGKSKVHVIDFSIKQGMQWPALLQALALRPGGPPKFRLTGVGPPVNNnnNIDYLQEVGCNLAQLADTIHVEFEYSRVIAESLADIEPGMLDLRD 345 *************************************************999888999****************************************** PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak.....lpreseerikvErellgre 293 +E++aVn+v+++h+ll++ +s+e+ vL ++k l+P +v+vveqea+hn++ Flerf+e+l+yys+lfdsle++ + +see++ +++++lg++ Han000593 346 DEVVAVNSVFEMHQLLARAGSVEK----VLTALKVLNPVIVTVVEQEANHNGPVFLERFTESLHYYSTLFDSLESGvfdslESGASEEDKAMSEVYLGKQ 441 ******************999999....*********************************************99844432233459************* PP GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 i+nvvacega+r+erh tl +W++ +++aGF++v+l+++a+kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaWr Han000593 442 ICNVVACEGADRVERHMTLTQWKSLFDSAGFESVHLGSNAYKQASMLLALFAgGDGYRVEENNGCLMLGWHTRPLITTSAWR 523 *********************************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 64.322 | 129 | 502 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.0E-130 | 155 | 523 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 528 aa Download sequence Send to blast |
XLSSWLESMI SELNPILQPP LTINNPFSND IVQAQPPAAV INNNSFLNDA VPVQVQVQPP 60 VVNNSFVNDV VVHIDDLQAI PGNAIYPPPP AKKLKTSSPS SSGGASFSST GASISGGACT 120 SFNRNQNQNQ SSNNNQNRTQ NQIVVVDSQE NGIRLVHTLM ACAEAGTKPD QKLAETLVSR 180 AGMLAASQAG AMRKVALYFT EALACRIYKL NPKSPPIHQS FNNILQSHFY EACPYLKFAH 240 FTANQAILEA FSGKSKVHVI DFSIKQGMQW PALLQALALR PGGPPKFRLT GVGPPVNNNN 300 NIDYLQEVGC NLAQLADTIH VEFEYSRVIA ESLADIEPGM LDLRDDEVVA VNSVFEMHQL 360 LARAGSVEKV LTALKVLNPV IVTVVEQEAN HNGPVFLERF TESLHYYSTL FDSLESGVFD 420 SLESGASEED KAMSEVYLGK QICNVVACEG ADRVERHMTL TQWKSLFDSA GFESVHLGSN 480 AYKQASMLLA LFAGGDGYRV EENNGCLMLG WHTRPLITTS AWRSRSTR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 4e-68 | 140 | 526 | 4 | 382 | Protein SCARECROW |
5b3h_A | 3e-68 | 150 | 526 | 13 | 381 | Protein SCARECROW |
5b3h_D | 3e-68 | 150 | 526 | 13 | 381 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021976370.1 | 0.0 | DELLA protein GAI1-like | ||||
Swissprot | Q8S4W7 | 0.0 | GAI1_VITVI; DELLA protein GAI1 | ||||
TrEMBL | A0A251U232 | 0.0 | A0A251U232_HELAN; Putative GRAS family transcription factor family protein | ||||
STRING | POPTR_0008s13090.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14920.1 | 0.0 | GRAS family protein |