PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||||||
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TF ID | Han000411 | ||||||||||||||||
Organism | |||||||||||||||||
Taxonomic ID | |||||||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | MYB | ||||||||||||||||
Protein Properties | Length: 233aa MW: 25853.8 Da PI: 5.8223 | ||||||||||||||||
Description | MYB family protein | ||||||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.3 | 8.5e-09 | 9 | 55 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwq 45 rWT e d + da + ++ +W++Ia + g++ +++k+++ Han000411 9 SRWTREQDRAFEDALVAYYKEdsedCWEKIATDVA-GKSVEEVKHHYE 55 59*****************99**************.**********96 PP | |||||||
2 | Myb_DNA-binding | 43.5 | 7.4e-14 | 115 | 159 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W+++E+ l++ + +++G+g+W++I+r + +Rt+ q+ s+ qky Han000411 115 AWSEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 159 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 6.414 | 6 | 62 | IPR017884 | SANT domain |
SMART | SM00717 | 8.1E-7 | 7 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.27E-7 | 10 | 58 | No hit | No description |
Pfam | PF00249 | 1.6E-5 | 10 | 55 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.87E-9 | 11 | 65 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.1E-5 | 11 | 58 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.825 | 108 | 164 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.24E-16 | 110 | 165 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.3E-17 | 112 | 162 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.0E-11 | 112 | 162 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-11 | 113 | 158 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.55E-10 | 115 | 160 | No hit | No description |
Pfam | PF00249 | 6.6E-12 | 115 | 159 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MADEVVGDSR WTREQDRAFE DALVAYYKED SEDCWEKIAT DVAGKSVEEV KHHYELLVDD 60 LDRIESGIVP LPSYSTSSDD SASHGGDDGT SKKGGESVHG GKSSKADQER RKGVAWSEDE 120 HRLFLLGLEK YGKGDWRSIS RNFVVTRTPT QVASHAQKYF IRLNSMNRDR RRSSIHDITS 180 VXHGDTSAPQ AAITGXTSTS PAGISLVDDX KRCCFYIVLK AACAHLRLES CDP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-15 | 11 | 77 | 11 | 76 | RADIALIS |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022020689.1 | 1e-143 | transcription factor SRM1-like isoform X1 | ||||
Refseq | XP_022020690.1 | 1e-143 | transcription factor SRM1-like isoform X2 | ||||
Swissprot | Q9FNN6 | 9e-91 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A251RM54 | 1e-142 | A0A251RM54_HELAN; Putative homeodomain-like transcriptional regulator | ||||
STRING | XP_006484484.1 | 1e-103 | (Citrus sinensis) | ||||
STRING | XP_006437648.1 | 1e-103 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 6e-87 | MYB family protein |
Publications ? help Back to Top | |||
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