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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||||||
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TF ID | Han000382 | ||||||||||||||||
Organism | |||||||||||||||||
Taxonomic ID | |||||||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | ERF | ||||||||||||||||
Protein Properties | Length: 252aa MW: 27854.9 Da PI: 5.1908 | ||||||||||||||||
Description | ERF family protein | ||||||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.9 | 6.8e-20 | 72 | 121 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++G+r+++ +g+W+AeIrdps+ r++lg+f taeeAa+a++a +++++g Han000382 72 QFRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTFNTAEEAARAYDAEARRIRG 121 69*******.**********965...4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.4E-32 | 72 | 130 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.3E-39 | 72 | 135 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.80E-32 | 72 | 129 | No hit | No description |
SuperFamily | SSF54171 | 4.32E-22 | 72 | 130 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.472 | 72 | 129 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-11 | 73 | 84 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.2E-12 | 73 | 121 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-11 | 95 | 111 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MCGGAILSDI IAPSANRSRP LTADNSPSDF FDDFEADFLG FKNNMPYAFS PSKNFAPGSD 60 EKSAGSKKRK NQFRGIRQRP WGKWAAEIRD PSKGVRVWLG TFNTAEEAAR AYDAEARRIR 120 GPKAKVNFPT PAKPKNHKST SAAAAAAYGF FVEDKPKPQP SESDALYISS DQGGSCNSFE 180 FPWGENCANP TKKPKTESVN LVSNCDNDLF FEMPYLEGNW DAAFLTGEDL NQQDGAANVM 240 DLWSFDDLQF FK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-20 | 72 | 129 | 5 | 63 | ATERF1 |
3gcc_A | 1e-20 | 72 | 129 | 5 | 63 | ATERF1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Han.4176 | 0.0 | embryo| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021984572.1 | 0.0 | ethylene-responsive transcription factor RAP2-12-like | ||||
Swissprot | Q6K7E6 | 1e-36 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | A0A251U3V9 | 0.0 | A0A251U3V9_HELAN; Putative integrase-type DNA-binding superfamily protein | ||||
STRING | Migut.I01124.1.p | 5e-63 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.3 | 3e-35 | related to AP2 12 |