PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G046443.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 339aa    MW: 37525.5 Da    PI: 7.0611
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G046443.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.9e-161462148
                          TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                          +g+W++eEd +l++++ ++G+g +W + ++++g++R++k+c++rw++yl
  HL.SW.v1.0.G046443.1 14 KGPWSPEEDAKLKEYIDKYGTGgNWIALPQKVGLRRCGKSCRLRWLNYL 62
                          79*********************************************97 PP
2Myb_DNA-binding44.43.9e-1469111246
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           g +++eEd +++++++  G++ W+ Ia+ ++ gRt++++k++w++
  HL.SW.v1.0.G046443.1  69 GEFSEEEDNIIINLFANIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                           78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.066962IPR017930Myb domain
SuperFamilySSF466896.39E-2811109IPR009057Homeodomain-like
SMARTSM007176.2E-131364IPR001005SANT/Myb domain
PfamPF002498.8E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-241569IPR009057Homeodomain-like
CDDcd001671.70E-91662No hitNo description
PROSITE profilePS5129423.45763117IPR017930Myb domain
SMARTSM007172.6E-1367115IPR001005SANT/Myb domain
PfamPF002494.8E-1369111IPR001005SANT/Myb domain
CDDcd001671.21E-970113No hitNo description
Gene3DG3DSA:1.10.10.607.7E-2570117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKEYID KYGTGGNWIA LPQKVGLRRC GKSCRLRWLN  60
YLRPNIKHGE FSEEEDNIII NLFANIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMSI  120
INPATQGLLL RNPHQPSTIS SLLQHSSSPS SSSSSSSPSS LICGQAGSFT TTTTGFEQPI  180
TSFSSTTILN QESYLGQMPP HYQVNRESFQ RLMFSNGGGE ASCSSSDGSC NNNEQAFLQT  240
NNFYHNNNNG VKQENQEAMM LSNGDNNNTI THVNGNGVWG SSEQAPLEYF GLEEIKQLIS  300
SSSSNTNNMT TANNNTSNCS NFIFDENKTT EERVLYYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010101625.11e-117transcription factor RAX2
TrEMBLA0A2P5BJT71e-144A0A2P5BJT7_PARAD; MYB transcription factor
STRINGXP_010101625.11e-116(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-78myb domain protein 36