PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G046363.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 553aa    MW: 60670.2 Da    PI: 7.3029
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G046363.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.6e-12339384454
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           +h e+Er+RR+++N++f  Lr+++P+       K++Ka+ L  Av YI++L
  HL.SW.v1.0.G046363.1 339 NHVEAERQRREKLNHRFYALRSVVPNV-----SKMDKASLLADAVVYINEL 384
                           799***********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.1E-4024207IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.971335384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-17336395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.86E-14338389No hitNo description
Gene3DG3DSA:4.10.280.104.2E-17339394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-10339384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-16341390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MAELMSPCSS TSVSVSQEIA MMTLQQRLQF IVQTRPEWWV YSIFWQAYKD DNNGVVLSWS  60
DGHFRGLKSK SSVGSQKDEA TTFGFDFEIM TRKKDSPHTI PAFPEEEEVM DVDGGGGGTD  120
IGWFYTMSIA RQFAAGILCR AFTTEEYIWL SGSQSFQFFG CDRAKEARMH GVQTLVCIAT  180
PSGVLELGSS DLIKEDWSLV QLIKSLFGSN NNCNSMVRRI HGNHHNDHNH HHNQAPISVR  240
NIPFLDTGIP SSPSGAKTES THLLLQEQTE AFAAMNNGTG TGTGSGSSSD SGRYDSDAHC  300
APSNSAGGRG HCGGSRSSQF PKKRGRKPVA IDQSPMPVNH VEAERQRREK LNHRFYALRS  360
VVPNVSKMDK ASLLADAVVY INELKAKVEE LEAKLVPETQ SNKYHHIMRP KKNTLGCLNN  420
SSSTSNSNNT ANKIDYYSSK LSSSVEQNRQ ISSYGSMAVA GGVGVAGVNN NIDVDVKMLG  480
SVVMIKVQCP DVNYPSARLM NALRDLEFQI IHVSISSVKE LLFHDVLVRV VPDRFSSDEA  540
IGSAIVRIMQ SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-24232108195Transcription factor MYC3
4rqw_B2e-24232108195Transcription factor MYC3
4rs9_A2e-24232108195Transcription factor MYC3
4yz6_A2e-24232108195Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010100202.11e-152transcription factor MYC2
TrEMBLA0A2P5DJQ30.0A0A2P5DJQ3_PARAD; Basic helix-loop-helix transcription factor
STRINGXP_010100202.11e-151(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.16e-35bHLH family protein