PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G046295.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 409aa    MW: 45803.8 Da    PI: 8.7891
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G046295.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.8e-17123168147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           rg W + Ed +l+++v+q+G+ +W++Ia+ +  gR++k+c++rw++ 
  HL.SW.v1.0.G046295.1 123 RGHWRPAEDAKLKELVTQYGPQNWNLIAENLE-GRSGKSCRLRWFNQ 168
                           899*****************************.***********996 PP
2Myb_DNA-binding55.99.5e-18175218146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           r ++++eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ 
  HL.SW.v1.0.G046295.1 175 RRAFSEEEEERLLAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 218
                           678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.33118169IPR017930Myb domain
SMARTSM007176.5E-14122171IPR001005SANT/Myb domain
SuperFamilySSF466899.73E-28123216IPR009057Homeodomain-like
PfamPF002492.5E-15123168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-26124176IPR009057Homeodomain-like
CDDcd001676.48E-13126167No hitNo description
PROSITE profilePS5129427.228170224IPR017930Myb domain
SMARTSM007174.5E-15174222IPR001005SANT/Myb domain
PfamPF002492.7E-14175217IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-20177223IPR009057Homeodomain-like
CDDcd001671.70E-7186217No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MNLHHLKSDF DCFNGYQNMS FLSTQNPAPS PHLSHYKTTF GVSGETMDGD SRRSCEMGFQ  60
FLSSSSEKSK KTWVFPEQME SRGGGENKHK ISDLNVFDEI PETEEVRVRS TAGKNGHTKL  120
CARGHWRPAE DAKLKELVTQ YGPQNWNLIA ENLEGRSGKS CRLRWFNQLD PRINRRAFSE  180
EEEERLLAAH RLYGNKWAMI ARLFPGRTDN AVKNHWHVIM ARKHREQSNV YKRRRPSSTS  240
SSCSQILVPK VIDMTLTSNT NNASSTTEST ISNTINDHES ISTCTELSLT PSSNRSSAHH  300
NNHQGLFFTK FNPSSQQESQ LGLKDGSFDK LIGFYRIGQR GGVANKTVVR LDQSGQSDSN  360
SENSAADSVA TNRSINLTMF GPNQSQNSKD KEDIISLSFI DFLGVGAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-321232237107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015899736.11e-143transcription factor MYB56-like
TrEMBLA0A2P5EK441e-179A0A2P5EK44_TREOI; MYB transcription factor
STRINGXP_010088473.11e-144(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-66myb domain protein 105