PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G046224.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 521aa    MW: 57500.5 Da    PI: 6.8877
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G046224.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.97.6e-08424464954
                           HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            r+RR+ri +++  L++l+P        K++ a++L +A +Y+k L
  HL.SW.v1.0.G046224.1 424 ARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 464
                           69******************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.332415464IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-14420479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-13421470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-11423473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-5424464IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.34E-4437469No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MDLGWDHGTV QAVMNTSSAL WSSNHLDHQH EIDERFLISN STYSANNNST IRGPQLLQKT  60
TQKLSSAMVN NSSSADVISN LSFSHNGQEA MSTLVKSGAP PPPPPPPTTN WGQTLTSREL  120
CSSPYNIYNP FTSSRFMSSS TRTTATTDFG TVLQSQQVVS NTGKAPATTT TCSDLESLDC  180
LLSATNSNTD TASVEDDDGI SMLFSDSRSL WNNIGAASSA AVSSGESENT NNDINNVLRN  240
KEMNCPLTDH HHHHEVDETV SQNVSSDRVV HIIQSQTKSV HHDHFKLSDN HKPNSTKRSH  300
DRNDHQNYDN STSFFNILQS DISLTAKEGQ GFRLISESDL PKAKKPRSEK RPPSSSNINF  360
QQPCNSSISN SSVDQEPDPE AIAQMKEMIY RAAAFRPVNL GLELVEKPKR KNVRISTDPQ  420
TVAARQRRER ISERIRVLQR LVPGGSKMDT ASMLDEAANY LKFLRSQVKA LENLGQKIDS  480
MNCPPTNIAF SFNPSFPMQT HVPSSLLQLQ NPNHVHHYQS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1424429RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010106120.11e-141transcription factor bHLH87
TrEMBLA0A2P5EFE80.0A0A2P5EFE8_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_010106120.11e-140(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45303257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.11e-63bHLH family protein