PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G046000.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

bHLH

Protein Properties

Length: 401aa MW: 45292.2 Da PI: 7.0723

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G046000.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.4	4e-16	258	304	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRRd+iN+++ +L++l+P++ K++Ka+iL A++++k Lq HL.SW.v1.0.G046000.1 258 LHNLSEKRRRDKINKRIRTLKTLIPNC-----NKVDKASILDDAIDHLKTLQ 304 6***********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.22E-17	252	308	No hit	No description
SuperFamily	SSF47459	3.01E-19	253	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-18	253	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.784	254	303	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-13	258	304	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.9E-17	260	309	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MDSGFVELAW ENDEIVRRRP PSTFMLSQRN SNSSTTAAAA VAGGDYNDNS SSQGHTLSKK 60 RGSLRTHTTN NYCYQDNHQP NTTPTRNVFE LFSSPKQCNK LASNGGEDRH RARPVLLKDC 120 LNKSSSTFQD DHDRDLQPPM KIVNNKRPVQ PAHDNSMCLV PDDHDDRQNP TLDQPHQTYY 180 DYDYPQNQED AALVPSLNSV GASNDHHDHL PMTHNGRRHH STATTTTLDQ DEDEDHDHDQ 240 DQEQELQHNL SRKRSTKLHN LSEKRRRDKI NKRIRTLKTL IPNCNKVDKA SILDDAIDHL 300 KTLQFQLQMM SMGAGLNVMN PMMAQYLMSC FSPMAMAPVS PLVASRLGVQ MFGFPAVSSS 360 VSQTSQPSAS FMPWHVPVPP SPQIPRFQTP MNYYYSPQNN *

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MDSGFVELAW ENDEIVRRRP PSTFMLSQRN SNSSTTAAAA VAGGDYNDNS SSQGHTLSKK  60
RGSLRTHTTN NYCYQDNHQP NTTPTRNVFE LFSSPKQCNK LASNGGEDRH RARPVLLKDC  120
LNKSSSTFQD DHDRDLQPPM KIVNNKRPVQ PAHDNSMCLV PDDHDDRQNP TLDQPHQTYY  180
DYDYPQNQED AALVPSLNSV GASNDHHDHL PMTHNGRRHH STATTTTLDQ DEDEDHDHDQ  240
DQEQELQHNL SRKRSTKLHN LSEKRRRDKI NKRIRTLKTL IPNCNKVDKA SILDDAIDHL  300
KTLQFQLQMM SMGAGLNVMN PMMAQYLMSC FSPMAMAPVS PLVASRLGVQ MFGFPAVSSS  360
VSQTSQPSAS FMPWHVPVPP SPQIPRFQTP MNYYYSPQNN *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	251	266	RKRSTKLHNLSEKRRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2P5ETH2	1e-87	A0A2P5ETH2_TREOI; Basic helix-loop-helix transcription factor

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF32294	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	3e-16	phytochrome interacting factor 3