PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

FAR1

Protein Properties

Length: 881aa MW: 99473.1 Da PI: 6.394

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G045821.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.8	1.5e-17	63	137	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA +vGF+ +++ s++sk +g i r+fvC k g ++++ ++ C+a+lkv+++ +gkw+vtk+++eHnH+l+ HL.SW.v1.0.G045821.1 63 FYDEYAMHVGFNSKVAPSSRSKFDGLINIREFVCGKDGVKRRQADS--------------CEAMLKVELKGQGKWVVTKFVKEHNHSLV 137 9************************************9998777..............*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-13	63	137	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.0E-30	274	366	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.103	552	588	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	8.6E-11	552	586	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.8E-8	563	590	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 881 aa Download sequence Send to blast
MDVEVIEVEG MSHRAMANDG DAEPNASRDT DTAENIIVHD DDDGIGEPYL GMEFDSEDAA 60 KIFYDEYAMH VGFNSKVAPS SRSKFDGLIN IREFVCGKDG VKRRQADSCE AMLKVELKGQ 120 GKWVVTKFVK EHNHSLVNPN KVHYIRPRRH FAGTAKTVAE AYQGAGTVPS GVMFVSMDGN 180 RSSAERNSGV RNSPTEFNRS AKNSATMNYA FNPCNRKRTL GRDAQNLLEY FKKMQAENPG 240 FFYAIQLDEE NRMTNVFWAD ARSRTAYSHF GDAVTLDTTY RVNQYRVPFA PFTGVNHHGQ 300 TVLFGCALLL DESEATFTWL FKTFLTAMND CPPASITTDQ DRAMQTAVAN VFPESRHCIS 360 KWHVLREGQE KLAHVCHAHP NFQSELYNCI NLTETIEEFE SSWNFILDKY DLRRNDWLLT 420 LYNARDKWVP VYFRDSFFAA ISSNPGYDGS FFEGYVNQQT TLPMFFRQYE RALENCFEKE 480 IEADFDTICN TPVLRTPSPM EKQAANLYTR KIFTKFQEEL VETFVYTANR IEGDGAISTF 540 RVAKFEDDNK AYLVTLNYPE MKANCSCQMF EYSGILCRHV LTVFTVTNVL TLPSPYILKR 600 WTRNAKSGAG LDERSSDSHA QESLTLRYNN LCREAIRYAE EGATATETYN AAMTALRDGG 660 KKIVIAKKNV AKVAPPSAQV SGASYDDRRN STLTSDSTPL LWPRHDEVLR RFNLNDAGAP 720 VQTVADLNLP RMAPVSLHRD DGTPENMVVL PCLKSMTWVM ENKNSTPGNR VAVINLKLQD 780 YSRTPSAESE VKFQLSRVSL EPMLRSMAYI SEQLSTPANK VAVINLKLQD TETTSGESEV 840 KFQVSKDTLG AMLRSMAYIR EQLSNPADIP PEPLLKKQRK *

Sequence ? help Back to Top

Protein Sequence Length: 881 aa Download sequence Send to blast

MDVEVIEVEG MSHRAMANDG DAEPNASRDT DTAENIIVHD DDDGIGEPYL GMEFDSEDAA  60
KIFYDEYAMH VGFNSKVAPS SRSKFDGLIN IREFVCGKDG VKRRQADSCE AMLKVELKGQ  120
GKWVVTKFVK EHNHSLVNPN KVHYIRPRRH FAGTAKTVAE AYQGAGTVPS GVMFVSMDGN  180
RSSAERNSGV RNSPTEFNRS AKNSATMNYA FNPCNRKRTL GRDAQNLLEY FKKMQAENPG  240
FFYAIQLDEE NRMTNVFWAD ARSRTAYSHF GDAVTLDTTY RVNQYRVPFA PFTGVNHHGQ  300
TVLFGCALLL DESEATFTWL FKTFLTAMND CPPASITTDQ DRAMQTAVAN VFPESRHCIS  360
KWHVLREGQE KLAHVCHAHP NFQSELYNCI NLTETIEEFE SSWNFILDKY DLRRNDWLLT  420
LYNARDKWVP VYFRDSFFAA ISSNPGYDGS FFEGYVNQQT TLPMFFRQYE RALENCFEKE  480
IEADFDTICN TPVLRTPSPM EKQAANLYTR KIFTKFQEEL VETFVYTANR IEGDGAISTF  540
RVAKFEDDNK AYLVTLNYPE MKANCSCQMF EYSGILCRHV LTVFTVTNVL TLPSPYILKR  600
WTRNAKSGAG LDERSSDSHA QESLTLRYNN LCREAIRYAE EGATATETYN AAMTALRDGG  660
KKIVIAKKNV AKVAPPSAQV SGASYDDRRN STLTSDSTPL LWPRHDEVLR RFNLNDAGAP  720
VQTVADLNLP RMAPVSLHRD DGTPENMVVL PCLKSMTWVM ENKNSTPGNR VAVINLKLQD  780
YSRTPSAESE VKFQLSRVSL EPMLRSMAYI SEQLSTPANK VAVINLKLQD TETTSGESEV  840
KFQVSKDTLG AMLRSMAYIR EQLSNPADIP PEPLLKKQRK *

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024022375.1	0.0	protein FAR1-RELATED SEQUENCE 3
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	W9R5U7	0.0	W9R5U7_9ROSA; Protein FAR1-RELATED SEQUENCE 3
STRING	XP_010097934.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]