PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G045601.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 574aa    MW: 63564.2 Da    PI: 4.8041
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G045601.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.38.4e-30302361159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  HL.SW.v1.0.G045601.1 302 MNDGCQWRKYGQKISKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 361
                           58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-32287363IPR003657WRKY domain
SuperFamilySSF1182902.48E-27295363IPR003657WRKY domain
PROSITE profilePS5081129.069297363IPR003657WRKY domain
SMARTSM007741.3E-36302362IPR003657WRKY domain
PfamPF031061.7E-26303361IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MGKGKDKEIN MEIDYLSLKI DSREEDIYDD DDDDDDEEEE EDNQDEESKE QDDDDDDDGD  60
GDQDHHGNKV LDHDQVHQPI LLVQVHSSKE AGEVEDEASV VVESLQENIM KPEELSMLQM  120
EMNRMKEENN VLRKVVEKTM KDYYDLQIKF ASIQQNNPKK QDTLAFLSLH DIQQNSSDKV  180
SDSENHKRKS PSPPSTHESA AEESHELGLS LRLQSSTNHK EEDQQRINTS KKKEEDQSGN  240
SNKLEGFASY NNNNNSSLAM QNKLQRTDNH QIAGITSHVG NGNPPNRKAR VSVRARCEAA  300
TMNDGCQWRK YGQKISKGNP CPRAYYRCTV APGCPVRKQV QRCLEDMSIL ITTYEGTHNH  360
PLPVGATAMA STTSAGASSY MLVDSNNPYS SHHGSTSNYS HMLINPMSQY NSNIRTLNPN  420
DPSKGIVLDL TNNTPQFPLP TSSSHHQPAN NFAWNIPNKF ATYNQNGSVA ESLVSSARPP  480
GLNDGVWQGE EKTSMAENVT AIASDPKFRV AVAAAITSLM NKENQATTTT NTAGSSSTFE  540
HPKEGENSGN GSSSHNWVLE NLSANGKAIR QTP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-21289365176WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6474051e-56KJ647405.1 Humulus lupulus clone HL1273 WRKY transcription factor gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024026192.11e-173probable WRKY transcription factor 9
TrEMBLA0A2P5BDA60.0A0A2P5BDA6_TREOI; WRKY domain containing protein
STRINGXP_007159029.11e-144(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93203141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.19e-65WRKY DNA-binding protein 9