PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G045595.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 377aa    MW: 42001.5 Da    PI: 7.0589
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G045595.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.84.5e-09202249455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L++l+P +     +K   Ka +L + ++Y++sLq
  HL.SW.v1.0.G045595.1 202 SHSLAERVRREKISERMKMLQKLVPGC-----EKvTGKALMLDEIINYVQSLQ 249
                           8*************************9.....67699***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.46E-11196253No hitNo description
SuperFamilySSF474594.45E-17196265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-17198264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.567198248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-6202249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-10204254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MAAFSYPHHS ILLDSVYLPN NMFKNMCGVM DQEEENTTNN NNNTNYCFSN NDFYSSDHQN  60
HHGILVHESS CVDHSSSKHG ALSSDNEPSV TKKQSTESST VVDKLESGEQ VTQKVTPMEK  120
KRKTRNGSSN SAQSKDHHGS GRGKKQKSCS GDSTKGKEEI IKKVKTNNNK NNDNKKKAED  180
QDQEPPTGYI HVRARRGQAT DSHSLAERVR REKISERMKM LQKLVPGCEK VTGKALMLDE  240
IINYVQSLQN QVEFLSMKLA SLNPMFYDFG LDLEAFLVRP EGLNTMASQI PSVPPCNQSQ  300
AFSTDNTTGT ATNFGITANS NYPLMDNSAP LLLQQGHQRP SAFNSHDNAG TLLWDMEDHR  360
QNFLNPSEFS NLCSFN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3918268e-72FQ391826.1 Vitis vinifera clone SS0AFA9YF22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093954.21e-140transcription factor bHLH137
TrEMBLA0A2P5FD211e-179A0A2P5FD21_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_010093954.11e-127(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41823358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.28e-53bHLH family protein