PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G045284.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GRAS
Protein Properties Length: 466aa    MW: 52480.5 Da    PI: 6.2036
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G045284.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS455.63.1e-139454621374
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                           l++lL++cA++v++g+le+a+  L+++s+l spdgd+mqR++ayfteALa r+++s+++ly+a+++++    ++see+ +++lf+e++P
  HL.SW.v1.0.G045284.1  45 LIQLLVACANHVAAGSLENANIGLEHISHLTSPDGDSMQRIVAYFTEALADRMLKSWPGLYRAFNSTKIV--SVSEEILIQRLFFELCP 131
                           689*************************************************************998887..6**************** PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                           +lk++++++NqaI ea+ege+++HiiD++ sq++Q + Llq+L++Rpegpp+lRiTg+++    +ke le+++ rL++ Ae+l++pf+f
  HL.SW.v1.0.G045284.1 132 FLKLAYVITNQAIFEAMEGEKMIHIIDLNSSQPAQMIDLLQTLSARPEGPPHLRITGIHE----QKEVLEQMALRLTEEAEKLDIPFQF 216
                           ************************************************************....9************************ PP

                  GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrll....................................................d 215
                           n+ ++++le+l++e+Lrvk+gEalaV+ vlqlh+ll                                                    +
  HL.SW.v1.0.G045284.1 217 NP-IVSKLENLDVESLRVKTGEALAVSAVLQLHSLLasdddmhkrnspsmsshlqklslmnqrplkdwlekdshnllsmspesalsplS 304
                           **.7999***************************************************************************9977542 PP

                  GRAS 216 esvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae 304
                             vs + +  ++L+++++lsPkv+vv+eqe++ n+ +++er++eal +y alfd+le+++pr+s er+kvE++l+g+ei+n++acegae
  HL.SW.v1.0.G045284.1 305 --VSGSPKMGSFLSALWGLSPKVMVVTEQESNNNGFTLMERISEALFFYGALFDCLESTIPRTSIERQKVEKMLFGEEIKNIIACEGAE 391
                           ..333335688****************************************************************************** PP

                  GRAS 305 rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                           r+erhe+lekW  rle aGF+ vpls++ ++qa +llr+ + + gy+++ee+g+l+++W+drpL+svSaWr
  HL.SW.v1.0.G045284.1 392 RTERHEKLEKWILRLELAGFGRVPLSYQGMMQATRLLRQSHvFSGYKIKEENGCLIICWQDRPLFSVSAWR 462
                           **********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.20419441IPR005202Transcription factor GRAS
PfamPF035141.1E-13645462IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MIKDEGSSSV TSSPLQFCHL LPSPGLGSSY PWMREPKSEE RGLYLIQLLV ACANHVAAGS  60
LENANIGLEH ISHLTSPDGD SMQRIVAYFT EALADRMLKS WPGLYRAFNS TKIVSVSEEI  120
LIQRLFFELC PFLKLAYVIT NQAIFEAMEG EKMIHIIDLN SSQPAQMIDL LQTLSARPEG  180
PPHLRITGIH EQKEVLEQMA LRLTEEAEKL DIPFQFNPIV SKLENLDVES LRVKTGEALA  240
VSAVLQLHSL LASDDDMHKR NSPSMSSHLQ KLSLMNQRPL KDWLEKDSHN LLSMSPESAL  300
SPLSVSGSPK MGSFLSALWG LSPKVMVVTE QESNNNGFTL MERISEALFF YGALFDCLES  360
TIPRTSIERQ KVEKMLFGEE IKNIIACEGA ERTERHEKLE KWILRLELAG FGRVPLSYQG  420
MMQATRLLRQ SHVFSGYKIK EENGCLIICW QDRPLFSVSA WRFRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-64334647381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010106407.10.0scarecrow-like protein 3
RefseqXP_024028049.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2P5DM640.0A0A2P5DM64_PARAD; GRAS transcription factor
STRINGXP_010106407.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]