PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G045277.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | ERF | ||||||||
Protein Properties | Length: 265aa MW: 28069.1 Da PI: 5.1376 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.4 | 2.7e-16 | 75 | 124 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++G+r ++ +g+Wv+eIr+p++ ++r++lg++ t+e+Aa+a++ a+++l+g+ HL.SW.v1.0.G045277.1 75 FFRGIR-CR-SGKWVSEIREPRK---TTRVWLGTYPTPEMAAAAYDVAALALKGH 124 69***9.55.6*********843...5*************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 19.823 | 66 | 131 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-26 | 75 | 137 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.05E-17 | 76 | 132 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.0E-9 | 76 | 124 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-25 | 76 | 132 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.58E-14 | 76 | 133 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MANPPTDVPK TDQPPNPSIS LVFSQSEVRP ISENQPPSPA VAEAVAGLIP SEDPPPHNPF 60 HSPRTGSSSV RKHPFFRGIR CRSGKWVSEI REPRKTTRVW LGTYPTPEMA AAAYDVAALA 120 LKGHDTALNF PNLASSYPVP ASTSATDIRA AAAKAAESKH HQQQAELKPK LKENKDGGDQ 180 SLKSVPGWVV NEESCSSGAN NNSELSSGGD GGSEFMDEEA LLNMPNLLVN MAEGMLVSPP 240 RINTPSSDDS AGNSDGGECL WSYT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00558 | DAP | Transfer from AT5G52020 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019081410.1 | 3e-63 | PREDICTED: ethylene-responsive transcription factor ERF027 | ||||
Swissprot | Q9FJ90 | 2e-52 | ERF25_ARATH; Ethylene-responsive transcription factor ERF025 | ||||
TrEMBL | A0A2P5D9E5 | 2e-88 | A0A2P5D9E5_PARAD; AP2/ERF domain containing protein | ||||
STRING | VIT_16s0100g00400.t01 | 1e-62 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF562 | 32 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 1e-44 | ERF family protein |
Publications ? help Back to Top | |||
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