PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

WRKY

Protein Properties

Length: 173aa MW: 19707.8 Da PI: 9.4389

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G045222.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.2	6.9e-33	93	151	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+v+r ++d+++v++tYeg Hnh+ HL.SW.v1.0.G045222.1 93 LDDGYRWRKYGQKAVKNSAYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHP 151 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.5E-33	79	151	IPR003657	WRKY domain
SuperFamily	SSF118290	1.29E-28	86	152	IPR003657	WRKY domain
PROSITE profile	PS50811	29.057	88	153	IPR003657	WRKY domain
SMART	SM00774	5.6E-38	93	152	IPR003657	WRKY domain
Pfam	PF03106	5.4E-26	94	151	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MNNSPNPNQE IDWISLFSGQ TGGITADEMT MNNSISCRSK TVLQNNSNNN NSEADGDHDQ 60 EDNQSNKRRA PGKTRKAARP RFAFQTRSAD DILDDGYRWR KYGQKAVKNS AYPRSYYRCT 120 HHTCNVKKQV QRLSKDTSIV VTTYEGIHNH PCEKLMETLT PLLRQMQFLS SF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	9e-26	83	150	7	74	Probable WRKY transcription factor 4
2lex_A	9e-26	83	150	7	74	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00539	DAP	Transfer from AT5G41570	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008354007.2	4e-75	probable WRKY transcription factor 24
Refseq	XP_010112967.2	2e-75	probable WRKY transcription factor 43
Swissprot	Q9FFS3	9e-57	WRK24_ARATH; Probable WRKY transcription factor 24
TrEMBL	A0A2P5D414	2e-82	A0A2P5D414_PARAD; WRKY domain containing protein
STRING	XP_010112967.1	3e-80	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3227	34	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41570.1	7e-59	WRKY DNA-binding protein 24