PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G045166.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 306aa    MW: 34659.2 Da    PI: 8.7598
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G045166.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.4e-181360148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT+eEd+ l ++v + G g+W+++ar  g++R++k+c++rw +yl
  HL.SW.v1.0.G045166.1 13 KGPWTPEEDKMLTEYVSLNGEGRWSSVARSAGLNRSGKSCRLRWVNYL 60
                          79********************************************97 PP
2Myb_DNA-binding50.35.4e-1666110147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           rg  T++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++
  HL.SW.v1.0.G045166.1  66 RGQITPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNFWRTH 110
                           7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.244860IPR017930Myb domain
SuperFamilySSF466895.24E-3110107IPR009057Homeodomain-like
SMARTSM007175.7E-161262IPR001005SANT/Myb domain
PfamPF002492.7E-171360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-231467IPR009057Homeodomain-like
CDDcd001672.43E-111560No hitNo description
PROSITE profilePS5129424.0361115IPR017930Myb domain
SMARTSM007171.1E-1365113IPR001005SANT/Myb domain
PfamPF002496.8E-1466110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-2468114IPR009057Homeodomain-like
CDDcd001671.03E-970111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGWGIQEQQG WRKGPWTPEE DKMLTEYVSL NGEGRWSSVA RSAGLNRSGK SCRLRWVNYL  60
RPGLKRGQIT PQEEGIIIEL HALWGNKWST IARYLPGRTD NEIKNFWRTH FKKKDKSSRK  120
QQKRRSQLLK DQKLVKGQTD LPLQAEAILD ATNQDQDQDQ AQDIIIIKHE NMALTTNNNN  180
SSSDQNTGAA KDYMINSTNV SSQTQIQIQS SIQPAMVYQD DAVSYSWSDL ITADQEYYYG  240
NLWGGLWNLD DQPYGRVNTN TNTNQAPAAG SGNNYNIYYG GENNHSNKNI IPIQNQAKAF  300
SSYGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24131147107B-MYB
1h8a_C3e-241311427127MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00388DAPTransfer from AT3G30210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010113169.17e-92myb-related protein 305
TrEMBLA0A2P5E9711e-138A0A2P5E971_TREOI; MYB transcription factor
STRINGXP_010113169.13e-91(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.11e-62myb domain protein 121