PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G045131.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | Trihelix | ||||||||
Protein Properties | Length: 682aa MW: 76202.2 Da PI: 7.0943 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 92.5 | 4.2e-29 | 75 | 158 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+laL+++r++m+ ++r+++lk+plWeevs+k++ gf+rs+k+Ckek+en+ k++k++keg+ ++t + +t+++fdql HL.SW.v1.0.G045131.1 75 RWPRQETLALLKIRQDMDATFRDSSLKGPLWEEVSRKLAVLGFQRSAKKCKEKFENVYKYHKRTKEGRTGKT--DGKTYRFFDQLA 158 8********************************************************************975..5556******96 PP | |||||||
2 | trihelix | 106.3 | 2.1e-33 | 479 | 564 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k+ev+aLi++rr +e ++ ++ k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+k+++kkr +e+s+tcpyf+ql+a HL.SW.v1.0.G045131.1 479 RWPKSEVQALINLRRTLELKYHENGPKGPLWEEISAGMKRLGYNRSSKRCKEKWENINKYFKKVKDSNKKR-PEDSKTCPYFHQLDA 564 8*********************************************************************8.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.013 | 72 | 134 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 4.3E-18 | 74 | 159 | No hit | No description |
CDD | cd12203 | 3.04E-23 | 74 | 139 | No hit | No description |
PROSITE profile | PS50090 | 6.992 | 74 | 132 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.3E-4 | 476 | 538 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-4 | 477 | 535 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.642 | 478 | 536 | IPR017877 | Myb-like domain |
CDD | cd12203 | 3.96E-27 | 478 | 543 | No hit | No description |
Pfam | PF13837 | 3.8E-23 | 479 | 565 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 682 aa Download sequence Send to blast |
MGDASAEAAV AAASVAAVAA QDHVVLRHEE GRGGGDGEGR IVEGNLSNNS AEEDNKLGGE 60 NVDDGGGGDR SGGNRWPRQE TLALLKIRQD MDATFRDSSL KGPLWEEVSR KLAVLGFQRS 120 AKKCKEKFEN VYKYHKRTKE GRTGKTDGKT YRFFDQLAAF EQNHHPPPLQ PPPPPSKPQI 180 IVNSPTTPWT TPPPITTTTP TTTVVTTTYH INNNLQNPTN NIPPSPLVVP LPPTPTPTPT 240 NNTNNNPTLN ISSNNSLFPP QTKSINHLNT TTTIPNLSSS SFPTAAAGTN NNHHHDHHLF 300 SSSSTSSSTA SDEEFQARSG QKRKRKWRDF FRKLTKEVIR KQEEMQKKFL ETVEKSEQAR 360 IVREDAWRLQ EMARVNREHE ILVQERSTAA AKDAAVIAFL QKVSGGSAVV APQNNSSHLF 420 LTNHENSNFH DHLHVPVSLP PLPPQPVVAT PPPRPKLGDN GLSYSANAAT SPVQLSPSRW 480 PKSEVQALIN LRRTLELKYH ENGPKGPLWE EISAGMKRLG YNRSSKRCKE KWENINKYFK 540 KVKDSNKKRP EDSKTCPYFH QLDALYREKT TIKNNVVQNN NGISEKTHFG MEPLMVQPER 600 QWPESSDHEE EEDGEELHEE DEILDEERDS SSTELEEDHH NHHVHNNNNH NNDRDRLHQQ 660 GGTGSYLVVD NKQSSSVDVV E* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015886444.1 | 1e-162 | trihelix transcription factor GT-2-like | ||||
Refseq | XP_028117969.1 | 1e-162 | trihelix transcription factor GT-2-like | ||||
TrEMBL | A0A2P5DSH1 | 0.0 | A0A2P5DSH1_PARAD; GAMYB transcription factor | ||||
STRING | XP_002532428.1 | 1e-160 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF373 | 34 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 8e-83 | Trihelix family protein |