PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G045035.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

bHLH

Protein Properties

Length: 267aa MW: 29887.2 Da PI: 5.5964

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G045035.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.7	8.8e-13	200	245	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L+el+P+ k + a++L +AveYIk+Lq HL.SW.v1.0.G045035.1 200 SIAERVRRTKISERMRKLQELVPNM----EKQTNTADMLDLAVEYIKDLQ 245 689*******************7....467***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.078	194	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.29E-17	198	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.65E-12	198	249	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.1E-15	199	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-9	200	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-13	200	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MESDLHHPQQ QMGSSSGLMR YRSAPSSYFT NILDREFCQQ FFNRPSSPET ERIFARTNED 60 ATFSSSNKLK NFSSGAGLMS HHLDELIDDK TLVAAIQDPS TEAFGEGHSN SNFVSNFPMG 120 SWDDTAIISD NITGLKRLRE EDEKPFSGLN SNASETQSME TGTRPPTMLA HHLSLPKTSS 180 EMAAIEKFEL SEGCATHPRS IAERVRRTKI SERMRKLQEL VPNMEKQTNT ADMLDLAVEY 240 IKDLQSQVQT LSDDRAKCTC SNKHQQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018830949.1	1e-88	PREDICTED: transcription factor bHLH130-like
Refseq	XP_018830951.1	1e-88	PREDICTED: transcription factor bHLH130-like
Swissprot	Q66GR3	4e-50	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A2P5EUL6	1e-109	A0A2P5EUL6_TREOI; Basic helix-loop-helix transcription factor
STRING	XP_010091980.1	4e-87	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4185	34	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	2e-52	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]