PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G044578.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB_related
Protein Properties Length: 352aa    MW: 38458.4 Da    PI: 10.3386
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G044578.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.74.2e-11555146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                          +++WT+eE+  l+ +v ++G g W+tI            R+  ++k++w++
  HL.SW.v1.0.G044578.1  5 KQKWTAEEEAALKAGVIKHGAGKWRTILTDPEfssilHLRSNVDLKDKWRN 55
                          79***********************************88***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.139161IPR017930Myb domain
SuperFamilySSF466891.17E-14267IPR009057Homeodomain-like
SMARTSM007171.9E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-12456IPR009057Homeodomain-like
PfamPF002492.0E-7555IPR001005SANT/Myb domain
CDDcd116601.46E-16657No hitNo description
Gene3DG3DSA:1.10.10.102.5E-16117189IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.8E-17117196IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005261.6E-13117182IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150424.866119187IPR005818Linker histone H1/H5, domain H15
PfamPF005389.2E-12124188IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV IKHGAGKWRT ILTDPEFSSI LHLRSNVDLK DKWRNINVTA  60
IWGSRQKAKL ALKKNLPTPK HDNNSLAVAS VLQNGEEIVD AKPLAISGGT LRNTNSKEPN  120
ARLDKLILDA ITNLKELRGS DRAAIAMYIE EKYWAPPNLK KLLSTKLKHM AANGKLIKVK  180
HRYRIGPSST GAEKRRSSSV LPLEERSKDH LVAEKSDVII LTKSQVDADL SKMRSMTAQE  240
AAAAAARAVA EAEAAIAAAE AAAREAEAAE AEAEAAQVFA KAAMKALKKW NCCRHKIWLS  300
TGATILANLL DHGDVTLNSH VSDKNKSKNH TGHVKIIPTW YVFMHLLVYI D*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00626PBMTransfer from PK06103.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021805529.11e-136telomere repeat-binding factor 2
RefseqXP_021805530.11e-136telomere repeat-binding factor 2
RefseqXP_021805531.11e-136telomere repeat-binding factor 2
RefseqXP_021805532.11e-136telomere repeat-binding factor 2
SwissprotQ9FJW54e-80TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBLA0A2P5D0H91e-140A0A2P5D0H9_PARAD; Telomeric repeat-binding factor
STRINGXP_008237807.11e-135(Prunus mume)
STRINGEMJ068341e-135(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-78telomere repeat binding factor 1
Publications ? help Back to Top
  1. Lee WK,Cho MH
    Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana.
    Nucleic Acids Res., 2016. 44(10): p. 4610-24
    [PMID:26857545]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]