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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
HL.SW.v1.0.G044515.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
|
| Family |
NAC |
| Protein Properties |
Length: 213aa MW: 24740.9 Da PI: 4.5281 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| HL.SW.v1.0.G044515.1 | genome | HOPBASE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 84 | 2.9e-26 | 9 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89
lppGfrF Ptdeel+ ++L +kv + + ++i+++d++ ++P+++ ++ ++ + yfFsk+ + +at++gyWk+ +
HL.SW.v1.0.G044515.1 9 LPPGFRFCPTDEELILQFLYPKVFLVPSTHLNIIPDLDLHLYHPREFTGTALSSGNMHYFFSKTTE--------DKATSNGYWKEMDIN 89
79*************************88889***************9665566778899998765........467999********* PP
NAM 90 kevlsk.kgelvglkktLvfy....kgrapkgektdWvmheyrl 128
++++++ +++vg+kk v++ +++ + ++t+W+m+ey+l
HL.SW.v1.0.G044515.1 90 EPIFVSgANNKVGVKKYYVYFvinhHESPTSVTETNWIMEEYNL 133
****9877788*********98875556667789********87 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 213 aa
Download sequence Send
to blast |
MGDNQDVKLP PGFRFCPTDE ELILQFLYPK VFLVPSTHLN IIPDLDLHLY HPREFTGTAL 60
SSGNMHYFFS KTTEDKATSN GYWKEMDINE PIFVSGANNK VGVKKYYVYF VINHHESPTS 120
VTETNWIMEE YNLCNNLELM STTSPTYKRR RKLKLDFKWV LCRVHERKLD DISLQSVQYE 180
DDDNGTELSC LDEMFLSSLD DDLDEISMQI LD*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 6e-20 | 6 | 168 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 6e-20 | 6 | 168 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 6e-20 | 6 | 168 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 6e-20 | 6 | 168 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 7e-20 | 6 | 168 | 17 | 169 | NAC domain-containing protein 19 |
| 3swm_B | 7e-20 | 6 | 168 | 17 | 169 | NAC domain-containing protein 19 |
| 3swm_C | 7e-20 | 6 | 168 | 17 | 169 | NAC domain-containing protein 19 |
| 3swm_D | 7e-20 | 6 | 168 | 17 | 169 | NAC domain-containing protein 19 |
| 3swp_A | 7e-20 | 6 | 168 | 17 | 169 | NAC domain-containing protein 19 |
| 3swp_B | 7e-20 | 6 | 168 | 17 | 169 | NAC domain-containing protein 19 |
| 3swp_C | 7e-20 | 6 | 168 | 17 | 169 | NAC domain-containing protein 19 |
| 3swp_D | 7e-20 | 6 | 168 | 17 | 169 | NAC domain-containing protein 19 |
| 4dul_A | 6e-20 | 6 | 168 | 14 | 166 | NAC domain-containing protein 19 |
| 4dul_B | 6e-20 | 6 | 168 | 14 | 166 | NAC domain-containing protein 19 |
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