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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G044478.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | bHLH | ||||||||
Protein Properties | Length: 157aa MW: 17305 Da PI: 9.7157 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.5 | 0.00013 | 43 | 81 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ ++ L++l+ + +K + a++L +A+eYI+ L HL.SW.v1.0.G044478.1 43 ERKEKLGAKIVALQQLVSPY-----GKTDTASVLMEAMEYIQFL 81 56667777888899999888.....9****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.779 | 32 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-11 | 40 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-8 | 41 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.05E-4 | 42 | 86 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
GEEAIVVRKM TEHKRSPCSV DQSSFPSLAS KRQKPDLLIS TKERKEKLGA KIVALQQLVS 60 PYGKTDTASV LMEAMEYIQF LHEQVKVLSA PYLQSTPPTK IQEMEAYKLR NRGLCLVPVS 120 CTLGVARSNG ADIWAPIKTT SPKFDSSSSI THSQFH* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010101389.2 | 1e-90 | transcription factor bHLH153 isoform X1 | ||||
Swissprot | Q7XJU2 | 4e-59 | BH153_ARATH; Transcription factor bHLH153 | ||||
TrEMBL | A0A2P5DWM3 | 1e-90 | A0A2P5DWM3_PARAD; Myc-type, basic helix-loop-helix (BHLH) domain containing protein | ||||
STRING | XP_008222500.1 | 3e-86 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10813 | 31 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05710.5 | 2e-61 | bHLH family protein |
Publications ? help Back to Top | |||
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