PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G044464.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 349aa    MW: 39344 Da    PI: 8.1276
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G044464.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.5e-171462148
                          TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                          +g+W++eEd++l+++++++G+g +W + +++ g++R++k+c++rw++yl
  HL.SW.v1.0.G044464.1 14 KGPWSPEEDLKLKEYIEKYGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                          79*********************************************97 PP
2Myb_DNA-binding41.33.7e-1369111246
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           g+++ eEd ++ ++++  G++ W+ Ia+ ++ gRt++++k++w++
  HL.SW.v1.0.G044464.1  69 GAFSDEEDRIICNLFANIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                           79*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.983962IPR017930Myb domain
SuperFamilySSF466891.25E-2711109IPR009057Homeodomain-like
SMARTSM007173.6E-131364IPR001005SANT/Myb domain
PfamPF002493.6E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-241569IPR009057Homeodomain-like
CDDcd001674.60E-101662No hitNo description
PROSITE profilePS5129422.78763117IPR017930Myb domain
SMARTSM007178.7E-1267115IPR001005SANT/Myb domain
PfamPF002499.1E-1269111IPR001005SANT/Myb domain
CDDcd001671.82E-870113No hitNo description
Gene3DG3DSA:1.10.10.608.2E-2470117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDLKLKEYIE KYGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGA FSDEEDRIIC NLFANIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGL  120
VPPISQRKIP LVPFPNSSHE ATTTITTYNQ PPLLPSTSLY RSFSSGLEHQ MSNILLSSSY  180
PNTPLCGTTS FNFQTQMQEK YLVGSTTTNN NPIPYNYIPV NDNNVLAFGS DQGRSCSSSS  240
DGSCNQQIKQ EEQVGFHNHP QGYNINMGNF NGFEEQMMIN YDNHQNQIWG GQKSNGYFGE  300
SSLEKYSCGL DQDLDKDHAV KISSSSNNNN YIINFDENKT QDKVMYFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-27141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2295721e-100KP229572.1 UNVERIFIED: Boehmeria nivea MYB transcription factor-like (MYB16) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010111829.11e-112transcription factor RAX2
SwissprotQ9FKL27e-77MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A2P5FTP71e-170A0A2P5FTP7_TREOI; MYB transcription factor
STRINGXP_010111829.11e-111(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-78myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]