PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G044461.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | GATA | ||||||||
Protein Properties | Length: 560aa MW: 61921.3 Da PI: 7.4653 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.8 | 2.3e-16 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+t+TplWR+gp ++ LCnaCG ++r kg+ HL.SW.v1.0.G044461.1 7 CHHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 ****************88888***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.9E-11 | 1 | 55 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.28E-11 | 5 | 45 | No hit | No description |
CDD | cd00202 | 2.51E-17 | 6 | 54 | No hit | No description |
Pfam | PF00320 | 3.8E-14 | 7 | 41 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.0E-12 | 7 | 41 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 7 | 32 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.121 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF13919 | 7.0E-8 | 291 | 382 | IPR028020 | ASX homology domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 560 aa Download sequence Send to blast |
MGKQGPCHHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RAEPDDFEDH 60 RIAKVKSISI IKNKEVKLLK RKQNYDSMVV GGVATDYNQG FRKVMEEDAS NRSSSGSAIS 120 NSESCAQFGG GDASDLTGWI FIKIETGLDT SPAQSNVWDT TVPSRKRTCV VRPKQSPVEK 180 LTKDLYSILQ EQQSSYFSGS SEEDLLFESE TPMVSVEIGH GSVLIRHPNA ITREEESEAS 240 SLSFDNKNSH SNEAYSHSTN LHDSKGITFI GSGSEKINFA GHGMEQEQLK REKSQHEIFQ 300 MLGSHNSPLR QIDLNDAVDF EEFRRHLTSD EQQQLLKYLP SIDVAKFPDS LKSLFESPQF 360 RENMTSFQQL LAEGIFDMSF SGAKPEDCKT LKKLVLNNFS KSKWVEHLQL LKNSKNSSRG 420 SSISGPNVAA SSNKRPQDNQ NKKFPGKPKR SKEIGKVKIV MKSPKRVIMK GGYDKKEIID 480 NDGSCFSPRS LFATSPDGSS FLLDPINFVE ESSDQDLLLD VPSNGSFAQA ELLLPTISFG 540 SQQASTSSSS ISPHHHAHP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010104842.1 | 0.0 | GATA transcription factor 26 | ||||
Swissprot | Q8W4H1 | 1e-150 | GAT26_ARATH; GATA transcription factor 26 | ||||
TrEMBL | A0A2P5CU96 | 0.0 | A0A2P5CU96_PARAD; GATA transcription factor | ||||
STRING | XP_010104842.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4424 | 31 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.3 | 1e-149 | GATA transcription factor 26 |