 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
HL.SW.v1.0.G044380.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
|
| Family |
C2H2 |
| Protein Properties |
Length: 367aa MW: 42588.6 Da PI: 8.8452 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| HL.SW.v1.0.G044380.1 | genome | HOPBASE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 20.1 | 1.7e-06 | 64 | 85 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23
+C+ Cg +F+ +Lk+H+++H
HL.SW.v1.0.G044380.1 64 TCEECGLTFKKAAYLKQHMQSH 85
6*******************99 PP
|
| 2 | zf-C2H2 | 16.2 | 2.9e-05 | 91 | 115 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23
++C+ dC s++rk++L+rH+ H
HL.SW.v1.0.G044380.1 91 HVCSvdDCRSSYRRKDHLTRHLLIH 115
799*******************998 PP
|
| 3 | zf-C2H2 | 12.5 | 0.00044 | 120 | 145 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23
+kCp +C+ Fs + n krH r H
HL.SW.v1.0.G044380.1 120 FKCPieNCKIEFSIQANVKRHVREkH 145
89*********************988 PP
|
| 4 | zf-C2H2 | 16.9 | 1.8e-05 | 160 | 184 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23
++C+ Cgk F +s L++H ++H
HL.SW.v1.0.G044380.1 160 HVCQevGCGKAFAYPSRLRKHEQSH 184
789999***************9998 PP
|
| 5 | zf-C2H2 | 14.7 | 8.7e-05 | 252 | 275 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHH.T CS
zf-C2H2 3 Cp..dCgksFsrksnLkrHirt.H 23
C C +Fs+ksnL++H++ H
HL.SW.v1.0.G044380.1 252 CLykGCLHTFSTKSNLNQHLKAvH 275
66679***************9877 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00355 | 27 | 17 | 39 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 13.297 | 63 | 90 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.0055 | 63 | 85 | IPR015880 | Zinc finger, C2H2-like |
| Gene3D | G3DSA:3.30.160.60 | 8.5E-6 | 64 | 84 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SuperFamily | SSF57667 | 2.19E-10 | 64 | 115 | No hit | No description |
| PROSITE pattern | PS00028 | 0 | 65 | 85 | IPR007087 | Zinc finger, C2H2 |
| Gene3D | G3DSA:3.30.160.60 | 4.2E-12 | 85 | 117 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| PROSITE profile | PS50157 | 9.494 | 91 | 120 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.037 | 91 | 115 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 93 | 115 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 2.64E-7 | 101 | 155 | No hit | No description |
| Gene3D | G3DSA:3.30.160.60 | 3.0E-4 | 118 | 143 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| PROSITE profile | PS50157 | 11.448 | 120 | 150 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.019 | 120 | 145 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 122 | 145 | IPR007087 | Zinc finger, C2H2 |
| Gene3D | G3DSA:3.30.160.60 | 1.7E-8 | 154 | 184 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SuperFamily | SSF57667 | 1.15E-5 | 156 | 186 | No hit | No description |
| PROSITE profile | PS50157 | 11.136 | 160 | 189 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.0034 | 160 | 184 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 162 | 184 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 6.9 | 192 | 217 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 194 | 217 | IPR007087 | Zinc finger, C2H2 |
| CDD | cd02980 | 0.0089 | 212 | 257 | No hit | No description |
| SMART | SM00355 | 12 | 220 | 241 | IPR015880 | Zinc finger, C2H2-like |
| SuperFamily | SSF57667 | 7.95E-8 | 231 | 292 | No hit | No description |
| SMART | SM00355 | 0.0088 | 250 | 275 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 11.697 | 250 | 280 | IPR007087 | Zinc finger, C2H2 |
| Gene3D | G3DSA:3.30.160.60 | 1.3E-4 | 251 | 277 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| PROSITE pattern | PS00028 | 0 | 252 | 275 | IPR007087 | Zinc finger, C2H2 |
| Gene3D | G3DSA:3.30.160.60 | 9.8E-6 | 278 | 302 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SMART | SM00355 | 6.8 | 281 | 307 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 283 | 307 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 367 aa
Download sequence Send
to blast |
MVEAGEERPI FRDIRRYFCD YCGICRSKKT LISSHILTHH KEELDKVKAE GESSTEGVEE 60
SKNTCEECGL TFKKAAYLKQ HMQSHSLERP HVCSVDDCRS SYRRKDHLTR HLLIHKGKLF 120
KCPIENCKIE FSIQANVKRH VREKHNEDRP STSTEREKQH VCQEVGCGKA FAYPSRLRKH 180
EQSHVKLESI EALCVEPGCM KIFTNEQCLR DHIQLCHQHI TCEVCGSKHL KKNMKRHLRS 240
HEEKVSVESI KCLYKGCLHT FSTKSNLNQH LKAVHFNKKP YVCGFSGCGK RFAYKHVRDN 300
HEKRSCHIYA HGDFEEADEQ FRSRPRGGRK RKYPSFVDLL VRKRITPRND LDGSFECLDS 360
FSCGGE*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 229 | 235 | LKKNMKR |
| 2 | 323 | 331 | RPRGGRKRK |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
