PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G044353.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family Trihelix
Protein Properties Length: 543aa    MW: 58765.4 Da    PI: 7.1838
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G044353.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix60.44.5e-19161247186
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                           +W++  + +L++a++++ ++l+rg+l++ +Weev++ +  r +  ++s +qCk+k +nl+kryk ++++++++   s s++p+f+++e
  HL.SW.v1.0.G044353.1 161 EWSDAAIACLLDAYTDKFTQLNRGNLRGRHWEEVAATVseRCERQTKSVEQCKNKVDNLKKRYKLERDRMNNG-GISASHWPWFKKME 247
                           5*************************************666667789************************99.566679*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.4E-22159249No hitNo description
Gene3DG3DSA:3.40.1160.104.1E-72295535IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B33.23301536IPR015963Uridylate kinase, bacteria
SuperFamilySSF536331.7E-57302535IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042544.54E-119304536No hitNo description
PfamPF006967.3E-23305515IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MASCDDDFSP LLGDDSNPNN TASAPTNPHH LSHAPAPHHL HQTYSTATVH RFSAGGPTPL  60
QTILNAGSPD KVVAGEEQDD GEDYGEAAAF CSNPFENDSD QNGGSVVGSE KRKDHHHHHH  120
RDEQLSDGGG SGAPYSYKKA KAASASGTSG GGGEYRKDRE EWSDAAIACL LDAYTDKFTQ  180
LNRGNLRGRH WEEVAATVSE RCERQTKSVE QCKNKVDNLK KRYKLERDRM NNGGISASHW  240
PWFKKMEQIV GNNLPVKVAS DDDKGASSSG NTPRQSKRYA LTTGSSAGQI HNIKPKSTTN  300
PRWRRVVFKI SGASLAGAAP NNIDSKVVML IAREVAMAAR VGVQVAIVVG GRNFFCGDTW  360
VNTTGLDRTT AYQIGMMATV MNSVLLQSAI EKMGVQTRVQ TAFSMHEVAE PYSRQRAIRH  420
LEKGRVVIFA GIGASTGNPL FSTDTAAAFR SLEIHAEAVL KGTNVDGVYD CTSQDNNFTF  480
EHISFRELVA RGATLMDSMA LTYCEENRIP VVVFNLLEPG NISKALCGEQ VGTLIDLNGR  540
IS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nwy_A9e-6030353550279Uridylate kinase
3nwy_B9e-6030353550279Uridylate kinase
3nwy_C9e-6030353550279Uridylate kinase
3nwy_D9e-6030353550279Uridylate kinase
3nwy_E9e-6030353550279Uridylate kinase
3nwy_F9e-6030353550279Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024922250.10.0uncharacterized protein LOC107432001 isoform X2
TrEMBLA0A2P5C5290.0A0A2P5C529_PARAD; Aspartate/glutamate/uridylate kinase
STRINGXP_010112506.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40623252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein