PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G044336.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

bHLH

Protein Properties

Length: 499aa MW: 53796.8 Da PI: 7.7839

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G044336.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.3	7.4e-05	386	424	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++++L++l+ + +K + a++L +A+ YIk Lq HL.SW.v1.0.G044336.1 386 RKEKLGDRIATLQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 424 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.871	374	423	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.22E-5	384	428	No hit	No description
SuperFamily	SSF47459	6.15E-11	384	436	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-8	388	431	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence Send to blast
MESANLRHQH QLPDQLVGSP PLPLGIGAAP SCYGFGSSSN HHHAWSSSPT TSSIFNNNFG 60 NTNPNYDGMV SSKSTIITTR PVKSRVDHDN NINPVSHDNI ISLNSSNMVN AEFEFPWTNC 120 NSTTSTTITH ESAYDMNLAA KIEEESESIS FPKFAEILNS CTSTASTTTS ATTTSSTTTS 180 PSNSISNVND DYGHFFLKRR DLITTSGRNG TDENLLVKTL SSSTGQVVNV GNQISSATSD 240 QFDSNIMNGT FGGLMAVGCR GQFSHIYPSI NISNFNQSSP SSNISVTCSL DINSIGPHQS 300 LNDMNNLDVF REIPSNNFCG LLRLDQMHLP QRLSSGHSKG KPSFINSEIT VAKRGGGLIE 360 PKTTQSAPNK KPKMESRTSC PPFKVRKEKL GDRIATLQQL VSPFGKTDTA SVLMEAIGYI 420 KFLQNQVETL SVPYMKSSRN KITKTTQRGV KEDGSESELK GDLRSRGLCL VPLSCMSYVT 480 GDGGGGSMWP PANYGGRT*

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence Send to blast

MESANLRHQH QLPDQLVGSP PLPLGIGAAP SCYGFGSSSN HHHAWSSSPT TSSIFNNNFG  60
NTNPNYDGMV SSKSTIITTR PVKSRVDHDN NINPVSHDNI ISLNSSNMVN AEFEFPWTNC  120
NSTTSTTITH ESAYDMNLAA KIEEESESIS FPKFAEILNS CTSTASTTTS ATTTSSTTTS  180
PSNSISNVND DYGHFFLKRR DLITTSGRNG TDENLLVKTL SSSTGQVVNV GNQISSATSD  240
QFDSNIMNGT FGGLMAVGCR GQFSHIYPSI NISNFNQSSP SSNISVTCSL DINSIGPHQS  300
LNDMNNLDVF REIPSNNFCG LLRLDQMHLP QRLSSGHSKG KPSFINSEIT VAKRGGGLIE  360
PKTTQSAPNK KPKMESRTSC PPFKVRKEKL GDRIATLQQL VSPFGKTDTA SVLMEAIGYI  420
KFLQNQVETL SVPYMKSSRN KITKTTQRGV KEDGSESELK GDLRSRGLCL VPLSCMSYVT  480
GDGGGGSMWP PANYGGRT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024030303.1	1e-107	transcription factor bHLH110
TrEMBL	A0A2P5F6H6	1e-158	A0A2P5F6H6_TREOI; Myc-type, basic helix-loop-helix (BHLH) domain containing protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4045	32	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	1e-56	bHLH family protein