PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G044212.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family TALE
Protein Properties Length: 718aa    MW: 78160.8 Da    PI: 7.7143
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G044212.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.21.6e-094124491954
                           HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  HL.SW.v1.0.G044212.1 412 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 449
                           554459******************************88 PP
2BELL124.15.4e-40274345172
                  BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                           erqe+q+kkakL+++l+eV++rY+qy++q+q+vissFe++ag+gsa+ Yt+lAl++iS++FrcLkdai++qi
  HL.SW.v1.0.G044212.1 274 ERQEIQMKKAKLITMLDEVEQRYRQYHHQMQIVISSFEQAAGVGSARTYTALALQTISKQFRCLKDAITGQI 345
                           79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.7E-64197343IPR006563POX domain
PfamPF075262.0E-50202342IPR006563POX domain
PROSITE profilePS5007112.309390453IPR001356Homeobox domain
CDDcd000864.85E-12393454No hitNo description
SMARTSM003895.3E-9393457IPR001356Homeobox domain
SuperFamilySSF466899.41E-17394459IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-28396459IPR009057Homeodomain-like
PfamPF059203.0E-18410449IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MATYFHGNSE IQAPDGGLQT LVLMNPAGYI PYSDTPPPPS AAGNLIFLNS AANSLAHHPN  60
ISHAPQSHHQ TQQFVTAIPS PHHQNHHSNH QDPNSQPMQT HQHDFSALHG FMPRVQYNLW  120
NTPDQSAAAR DTPRAQQGGL SLTLSSQQLG GFGSFRSDRE IPSPAQTQGQ APAISGEDMR  180
VSGGSSSSVS GVTNGVPGIQ SVLLSSKYLR AAQELLDEVV NVGNGLRNEP SKKGTNSQQI  240
KPTGESSAAA SGDGSPVAAG DASGKRASEL TPAERQEIQM KKAKLITMLD EVEQRYRQYH  300
HQMQIVISSF EQAAGVGSAR TYTALALQTI SKQFRCLKDA ITGQIRAANK SLGEEDCLNG  360
AGKIEGSRLK YVDHHLRQQR ALQQLGMIQQ NAWRPQRGLP ERSVSVLRAW LFEHFLHPYP  420
KDSDKHMLAK QTGLTRSQVS NWFINARVRL WKPMVEEMYL EEIKEHEQNG AGEKVSKSNE  480
DSDSKSTTPK EKSPAADNQT GSFNSKQENS ITQFVPSAIS MSTPSPSPTG VSNHRNHSGF  540
SLIGSSELDG ITQGSPKKQR NTETLPSPNS FPSINMDVKP GKVTNEQISM KFGEDHRQNR  600
DGYSFMGNQT NFIGGFGQYP MAEIGRFDAE QFTPRYSGNG VSLTLGLPHC ENLSLSGAHQ  660
AFVPNQGIQL GRRVDIGEPN EFGAMNSPTP HSSAAFENIN IQNPKRFAAQ LLPDYVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A6e-16399457563Homeobox protein Meis2
3k2a_B6e-16399457563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015868214.10.0BEL1-like homeodomain protein 1
RefseqXP_015868215.10.0BEL1-like homeodomain protein 1
RefseqXP_015868216.10.0BEL1-like homeodomain protein 1
RefseqXP_015868217.10.0BEL1-like homeodomain protein 1
RefseqXP_015868218.10.0BEL1-like homeodomain protein 1
RefseqXP_015900418.10.0BEL1-like homeodomain protein 1
RefseqXP_015900419.10.0BEL1-like homeodomain protein 1
RefseqXP_015900420.10.0BEL1-like homeodomain protein 1
RefseqXP_015900421.10.0BEL1-like homeodomain protein 1
RefseqXP_015900422.10.0BEL1-like homeodomain protein 1
RefseqXP_015900424.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ560.0BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A2P5FI180.0A0A2P5FI18_TREOI; Homeodomain transcription factor
STRINGEMJ054490.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16273492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-169BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]