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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
HL.SW.v1.0.G044202.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
|
| Family |
MYB |
| Protein Properties |
Length: 479aa MW: 54606.4 Da PI: 10.3096 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| HL.SW.v1.0.G044202.1 | genome | HOPBASE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 50.9 | 3.6e-16 | 20 | 65 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg W + Ede+l ++v ++G+ +W+ Ia+++ gR++k+c++rw++
HL.SW.v1.0.G044202.1 20 RGHWRPGEDEKLRELVDRYGPQNWNFIAEHLE-GRSGKSCRLRWYNQ 65
899*****************************.************96 PP
|
| 2 | Myb_DNA-binding | 50.5 | 4.8e-16 | 72 | 116 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
++++T+eE+e+l+ a++ +G++ W+ Ia+++ gRt++ +k++++ +
HL.SW.v1.0.G044202.1 72 KKPFTEEEEERLLAAHRIYGNK-WACIAKYFH-GRTDNAVKNHYHVV 116
689*******************.*********.***********976 PP
|
| 3 | Myb_DNA-binding | 50.9 | 3.6e-16 | 183 | 228 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg W + Ede+l ++v ++G+ +W+ Ia+++ gR++k+c++rw++
HL.SW.v1.0.G044202.1 183 RGHWRPGEDEKLRELVDRYGPQNWNFIAEHLE-GRSGKSCRLRWYNQ 228
899*****************************.************96 PP
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| 4 | Myb_DNA-binding | 50.5 | 4.8e-16 | 235 | 279 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
++++T+eE+e+l+ a++ +G++ W+ Ia+++ gRt++ +k++++ +
HL.SW.v1.0.G044202.1 235 KKPFTEEEEERLLAAHRIYGNK-WACIAKYFH-GRTDNAVKNHYHVV 279
689*******************.*********.***********976 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 479 aa
Download sequence Send
to blast |
MGRSSSDISS DHGGGKNCYR GHWRPGEDEK LRELVDRYGP QNWNFIAEHL EGRSGKSCRL 60
RWYNQLDPNI NKKPFTEEEE ERLLAAHRIY GNKWACIAKY FHGRTDNAVK NHYHVVMARR 120
KRERLSSSSS SSSSQIIAHH HHHNNNNNNP HHHHHIQRKT LAHMGRSSSD ISSDHGGGKN 180
CYRGHWRPGE DEKLRELVDR YGPQNWNFIA EHLEGRSGKS CRLRWYNQLD PNINKKPFTE 240
EEEERLLAAH RIYGNKWACI AKYFHGRTDN AVKNHYHVVM ARRKRERLSS SSSSSSSQII 300
AHHHHHNNNN NNPHHHHHMV TTNNNKSTIT TTSFTSTYNP KLGFLKFQTG PGHAPAATAR 360
DHHHHQKMRI WGILSSSSST SNSFGTSASA TTISRDHHHH VLGLGSVVPN NHRPKDVGLG 420
LLNNPHGLGI EENSSVNGNK SKLQVMRVGM ASQKENKDHH QVPFIDFLGV DRVNFISS*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}. |
| Publications
? help Back to Top |
- Leonard LM,Follette VM
Sexual functioning in women reporting a history of child sexual abuse: review of the empirical literature and clinical implications.
Annu Rev Sex Res, 2002. 13: p. 346-88
[PMID:12836736] - Wang L,Li X,Chen Z
Sulfated modification of the polysaccharides obtained from defatted rice bran and their antitumor activities.
Int. J. Biol. Macromol., 2009. 44(2): p. 211-4
[PMID:19135473] - Wang L,Huang H,Wei Y,Li X,Chen Z
Characterization and anti-tumor activities of sulfated polysaccharide SRBPS2a obtained from defatted rice bran.
Int. J. Biol. Macromol., 2009. 45(4): p. 427-31
[PMID:19549538] - Zhang H, et al.
Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development.
Plant Cell, 2010. 22(3): p. 672-89
[PMID:20305120] - Zhang H, et al.
Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production.
Proc. Natl. Acad. Sci. U.S.A., 2013. 110(1): p. 76-81
[PMID:23256151] - Zhu X, et al.
Brassinosteroids promote development of rice pollen grains and seeds by triggering expression of Carbon Starved Anther, a MYB domain protein.
Plant J., 2015. 82(4): p. 570-81
[PMID:25754973] - Li X, et al.
Metabolic and transcriptomic signatures of rice floral organs reveal sugar starvation as a factor in reproductive failure under heat and drought stress.
Plant Cell Environ., 2015. 38(10): p. 2171-92
[PMID:25828772] - Shaar-Moshe L,Hübner S,Peleg Z
Identification of conserved drought-adaptive genes using a cross-species meta-analysis approach.
BMC Plant Biol., 2015. 15: p. 111
[PMID:25935420]
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