PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G044103.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | LBD | ||||||||
Protein Properties | Length: 311aa MW: 33919.2 Da PI: 7.6466 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 99.7 | 2.7e-31 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +C++C++lr++C+++C ++p++ p++q++++ +++k++G++ +++l++a pe++r+++++sl+yeA+ r+ +P+yG+vg++++++ HL.SW.v1.0.G044103.1 4 SCNGCRILRKGCSENCSIRPCLqwiknPESQANATVFLAKFYGRAGLMNLINAGPEHHRPAIFRSLLYEACGRIVNPIYGSVGLLWSGS 92 6**************************************************************************************** PP DUF260 85 qqleqlkaelallke 99 ++l+q+++e++l ++ HL.SW.v1.0.G044103.1 93 WHLCQAAVEAVLKGA 107 *********998766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038155 | 3.2E-94 | 1 | 305 | IPR017414 | LOB domain-containing protein 10/36/41 |
PROSITE profile | PS50891 | 17.219 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.5E-25 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MRMSCNGCRI LRKGCSENCS IRPCLQWIKN PESQANATVF LAKFYGRAGL MNLINAGPEH 60 HRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWHLCQAAV EAVLKGAPIT PITSEAAVSS 120 HGPPLKAYDI RHVSKDENSA ASNDPTNQQR LTKTRCRFKR TVIKPKARKA TEFEVEGTRC 180 DTTQSKWAGY CAEEVNRSTS HDSSVSHQSD TAPNVDGDSK ETETSMVSVE TAEVSLLFRA 240 EPESATKPDN ESARDNEPGL ELTLGFEPAQ HARRHVVPVK KRRIEAAGSD GCATFDDGAC 300 KIELGLEYPA * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010103788.1 | 1e-169 | LOB domain-containing protein 40 | ||||
Swissprot | Q9M886 | 1e-101 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A2P5DY66 | 0.0 | A0A2P5DY66_PARAD; LOB domain-containing protein | ||||
STRING | XP_010103788.1 | 1e-168 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1546 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 9e-96 | LOB domain-containing protein 41 |