PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G044103.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family LBD
Protein Properties Length: 311aa    MW: 33919.2 Da    PI: 7.6466
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G044103.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.72.7e-314107199
                DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                           +C++C++lr++C+++C ++p++     p++q++++ +++k++G++ +++l++a pe++r+++++sl+yeA+ r+ +P+yG+vg++++++
  HL.SW.v1.0.G044103.1   4 SCNGCRILRKGCSENCSIRPCLqwiknPESQANATVFLAKFYGRAGLMNLINAGPEHHRPAIFRSLLYEACGRIVNPIYGSVGLLWSGS 92 
                           6**************************************************************************************** PP

                DUF260  85 qqleqlkaelallke 99 
                           ++l+q+++e++l ++
  HL.SW.v1.0.G044103.1  93 WHLCQAAVEAVLKGA 107
                           *********998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381553.2E-941305IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089117.2193109IPR004883Lateral organ boundaries, LOB
PfamPF031955.5E-254102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MRMSCNGCRI LRKGCSENCS IRPCLQWIKN PESQANATVF LAKFYGRAGL MNLINAGPEH  60
HRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWHLCQAAV EAVLKGAPIT PITSEAAVSS  120
HGPPLKAYDI RHVSKDENSA ASNDPTNQQR LTKTRCRFKR TVIKPKARKA TEFEVEGTRC  180
DTTQSKWAGY CAEEVNRSTS HDSSVSHQSD TAPNVDGDSK ETETSMVSVE TAEVSLLFRA  240
EPESATKPDN ESARDNEPGL ELTLGFEPAQ HARRHVVPVK KRRIEAAGSD GCATFDDGAC  300
KIELGLEYPA *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010103788.11e-169LOB domain-containing protein 40
SwissprotQ9M8861e-101LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A2P5DY660.0A0A2P5DY66_PARAD; LOB domain-containing protein
STRINGXP_010103788.11e-168(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.19e-96LOB domain-containing protein 41