PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G043787.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

bHLH

Protein Properties

Length: 273aa MW: 30823.8 Da PI: 6.9001

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G043787.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.1	3.2e-13	100	152	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR+++N+ ++ Lr llP+ + + kKls +++ ++ +Y+ +Lq HL.SW.v1.0.G043787.1 100 KKLNHNASERDRRNKVNHMYSALRALLPNsD---HTKKLSIPATVSRVLKYVPDLQ 152 6789***********************44...6666************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.07E-12	98	156	No hit	No description
SuperFamily	SSF47459	1.15E-14	99	169	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.605	99	151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.4E-11	100	170	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-10	100	152	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.4E-9	105	157	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MISFPTPPPP PPFISTNIVG WPLEDPIRHE DQNYFFRDIA TSSDPDQYSL LFLNNYFPAP 60 PPPSDQDHHH HRFEVDLSTT PSSSTTITIN TTTDLTMVKK KLNHNASERD RRNKVNHMYS 120 ALRALLPNSD HTKKLSIPAT VSRVLKYVPD LQEEIEGLVH MKKELLSRIK SRQQGNTTTD 180 QEINKIKSTA PNSLSSISAT QLSDKEVAVQ ISTYKLHNNL LSQMLHNLEN DGLSLLHASS 240 FESFGGRLFH NLHLQTSDEI GIERVILKLL EM*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010108529.2	4e-89	uncharacterized protein LOC21402320
TrEMBL	A0A2P5ETM5	1e-101	A0A2P5ETM5_TREOI; Basic helix-loop-helix transcription factor
STRING	XP_010108530.1	2e-85	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2402	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56970.1	1e-45	bHLH family protein