PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G043771.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 276aa    MW: 31899.9 Da    PI: 9.1367
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G043771.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.12.3e-192269148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT+eEd ll+++v+++G g+W+++ar  g++R +k+c++rw +yl
  HL.SW.v1.0.G043771.1 22 KGPWTAEEDRLLIEYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 69
                          79********************************************97 PP
2Myb_DNA-binding51.72e-1675119147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  HL.SW.v1.0.G043771.1  75 RGQITPHEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 119
                           7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.1531773IPR017930Myb domain
SuperFamilySSF466891.72E-3019116IPR009057Homeodomain-like
SMARTSM007173.9E-172171IPR001005SANT/Myb domain
PfamPF002496.5E-182269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-242376IPR009057Homeodomain-like
CDDcd001672.97E-122469No hitNo description
SMARTSM007171.4E-1474122IPR001005SANT/Myb domain
PROSITE profilePS5129419.50374124IPR017930Myb domain
PfamPF002491.2E-1375119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-2477123IPR009057Homeodomain-like
CDDcd001676.69E-1079120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MYWGAMAGHM GWGILEEEGW RKGPWTAEED RLLIEYVRLH GEGRWNSVAR LAGLKRNGKS  60
CRLRWVNYLR PDLKRGQITP HEESIILELH ARWGNRWSTI ARSLPGRTDN EIKNYWRTHF  120
KKKQAKVTSD ASEKAKARLL KRQQFHQQQL HQHQQQQQQQ QLHHQQLNQM DLKRIMALLD  180
GDNEHNKSAQ AVPQLRQEIT TAAFPQTADE QSFLYTMLNE NNNVSAVPEA PITEDILWDG  240
LWNLDDFHGN GAVNFNANCS TAKANTLHNL VVPFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-272212327127MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT3239211e-142KT323921.1 Morus alba var. multicaulis isolate LOC122724841 transcription factor GAMYB-like protein (MYB3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021807006.11e-125myb-related protein 305-like
TrEMBLA0A2P5FAR51e-163A0A2P5FAR5_TREOI; MYB transcription factor
STRINGXP_010095222.11e-132(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.14e-87myb domain protein 305