PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G043678.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

Protein Properties

Length: 416aa MW: 46859.1 Da PI: 7.4733

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G043678.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	44.2	3.5e-14	80	154	16	98
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + lpkkf++ h + +++++++ledesg++ + k+ + + l++GW++F a++L egD+vvF+l++ +++v ++r HL.SW.v1.0.G043678.1 80 MGLPKKFCDMHL-P-KQDTMMVLEDESGQVCDAKY--LALK--VGLSAGWRGFSIAHKLVEGDVVVFHLVS--PLKFKVYIIR 154 789***9995.3.37789***********..4444..44*********************986..5555888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	10.391	65	156	IPR003340	B3 DNA binding domain
SMART	SM01019	6.5E-10	72	156	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.39E-17	79	156	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	4.3E-15	79	156	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.07E-19	80	154	No hit	No description
Pfam	PF02362	2.2E-11	80	154	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MVVAQRRQSP SDSSPQKVKR GRPTKEKEMR VVCYDPMKTE SNKRKKVNVE SLYNNSKAAS 60 PTMERAYEVQ ANLAPQFPSM GLPKKFCDMH LPKQDTMMVL EDESGQVCDA KYLALKVGLS 120 AGWRGFSIAH KLVEGDVVVF HLVSPLKFKV YIIRSHCPDE VDGALGLLKL EAHMKQMDNT 180 GNIIACEKET KSLKPDVLDC PFNINIQKTI SWTSEQSDKD YEVIGPEVLD GIRLSESAIS 240 FEQVKHFDDF NILVNGLIIN SELPKYLLAK YYELCRSQKA FLHEHILEGL NCKLVAGVIS 300 ETINIADAIR ASKISSSVND FTTWEKTLKA FEGLGMNVGF LCSRLEQLAS LASKSKRYEN 360 VKVEREDAKE ELRSLEKKML IVKERLSSLD TEFEAIGVHF QDLQLKFKEV ASAPW*

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MVVAQRRQSP SDSSPQKVKR GRPTKEKEMR VVCYDPMKTE SNKRKKVNVE SLYNNSKAAS  60
PTMERAYEVQ ANLAPQFPSM GLPKKFCDMH LPKQDTMMVL EDESGQVCDA KYLALKVGLS  120
AGWRGFSIAH KLVEGDVVVF HLVSPLKFKV YIIRSHCPDE VDGALGLLKL EAHMKQMDNT  180
GNIIACEKET KSLKPDVLDC PFNINIQKTI SWTSEQSDKD YEVIGPEVLD GIRLSESAIS  240
FEQVKHFDDF NILVNGLIIN SELPKYLLAK YYELCRSQKA FLHEHILEGL NCKLVAGVIS  300
ETINIADAIR ASKISSSVND FTTWEKTLKA FEGLGMNVGF LCSRLEQLAS LASKSKRYEN  360
VKVEREDAKE ELRSLEKKML IVKERLSSLD TEFEAIGVHF QDLQLKFKEV ASAPW*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024029001.1	1e-168	B3 domain-containing protein Os01g0234100
TrEMBL	A0A2P5CQR4	0.0	A0A2P5CQR4_TREOI; B3 DNA binding domain containing protein
STRING	XP_010107958.1	1e-161	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1007	33	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	7e-27	B3 family protein